Date: Fri, 3 Jul 2015 05:50:23 GMT From: pkg-fallout@FreeBSD.org To: bf@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][math/R] Failed for R-3.0.2_6 in stage Message-ID: <201507030550.t635oNQp041809@beefy4.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bf@FreeBSD.org Last committer: antoine@FreeBSD.org Ident: $FreeBSD: head/math/R/Makefile 390310 2015-06-22 18:33:20Z antoine $ Log URL: http://beefy4.nyi.freebsd.org/data/head-amd64-default/p391126_s285017/logs/R-3.0.2_6.log Build URL: http://beefy4.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p391126_s285017 Log: ====>> Building math/R build started at Fri Jul 3 05:26:40 UTC 2015 port directory: /usr/ports/math/R building for: FreeBSD head-amd64-default-job-09 11.0-CURRENT FreeBSD 11.0-CURRENT r285017 amd64 maintained by: bf@FreeBSD.org Makefile ident: $FreeBSD: head/math/R/Makefile 390310 2015-06-22 18:33:20Z antoine $ Poudriere version: 3.1.7 Host OSVERSION: 1100076 Jail OSVERSION: 1100077 !!! Jail is newer than host. (Jail: 1100077, Host: 1100076) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- OSVERSION=1100077 UNAME_v=FreeBSD 11.0-CURRENT r285017 UNAME_r=11.0-CURRENT LC_COLLATE=C BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-3.0.2_6 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.7 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.0.2_6: ATLAS=off: Use ATLAS instead of BLAS/LAPACK DOCS=on: Build and/or install documentation GHOSTSCRIPT=on: [dev2]bitmap() graphics devices ICU=on: Use ICU for collation in multibyte locales INFO_MANUALS=on: GNU info manuals JPEG=on: jpeg() graphics device LETTER_PAPER=off: US Letter paper LIBR=on: R shared library and a dynamically-linked R MISSING=off: use libmissing rather than libquadmath PANGOCAIRO=on: cairo and pango graphics support PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE PDF_MANUALS=off: PDF manuals (requires TeX) PNG=on: png() graphics device TCLTK=on: tcltk package THREADS=on: Threading support TIFF=on: TIFF image format support X11=on: X11() graphics device ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-memory-profiling rdocdir=/usr/local/share/doc/R --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --with-jpeglib --enable-R-shlib --with-libpng --with-tcltk --with-tcl-config=/usr/local/lib/tcl8.6/tclConfig.sh --with-tk-config=/usr/local/lib/tk8.6/tkConfig.sh --with-libtiff --with-x --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- LIBR_LDFLAGS=" -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" OBJC="gcc48" SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" R_LD_LIBRARY_PATH="/usr/local/lib/gcc48:/usr/local/lib" TAR="/usr/bin/tar" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" ac_cv_path_KPSEWHICH="" ac_cv_path_MAKEINDEX="" ac_cv_path_PDFLATEX="" ac_cv_path_PDFTEX="" ac_cv_path_TEX="" ac_cv_path_TEXI2DVI="" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG _HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing" CPP="cpp48" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS="" CXX="g++48" CXXFLAGS="-O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc48" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_SOVERSION="1" RBLAS_SOVERSION="2" RLAPACK_SOVERSION="4" LAPACK="" NLS="" LIBR="" PANGOCAIRO="" TCLTK="" X11="" PDF_MANUAL="@comment " OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PERL_VERSION=5.20.2 PERL_VER=5.20 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.20 DOCSDIR="share/doc/R" EXAMPLESDIR="share/examples/R" DATADIR="share/R" WWWDIR="www/R" ETCDIR="etc/R" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/R DOCSDIR=/usr/local/share/doc/R EXAMPLESDIR=/usr/local/share/examples/R WWWDIR=/usr/local/www/R ETCDIR=/usr/local/etc/R --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-3.0.2_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.5.4.txz [head-amd64-default-job-09] Installing pkg-1.5.4... [head-amd64-default-job-09] Extracting pkg-1.5.4: .......... done Message for pkg-1.5.4: If you are upgrading from the old package format, first run: # pkg2ng ===> R-3.0.2_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-3.0.2_6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.2_6 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.2_6 for building => SHA256 Checksum OK for R-3.0.2.tar.gz. => SHA256 Checksum OK for R-patched-20131112-r64207.diff.bz2. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.0.2_6 for building ===> Extracting for R-3.0.2_6 => SHA256 Checksum OK for R-3.0.2.tar.gz. => SHA256 Checksum OK for R-patched-20131112-r64207.diff.bz2. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-3.0.2_6 ===> Applying distribution patches for R-3.0.2_6 ===> Applying FreeBSD patches for R-3.0.2_6 =========================================================================== =======================<phase: build-depends >============================ ===> R-3.0.2_6 depends on file: /usr/local/bin/gsed - not found ===> Installing existing package /packages/All/gsed-4.2.2.txz [head-amd64-default-job-09] Installing gsed-4.2.2... [head-amd64-default-job-09] `-- Installing gettext-runtime-0.19.4... [head-amd64-default-job-09] | `-- Installing indexinfo-0.2.3... [head-amd64-default-job-09] | `-- Extracting indexinfo-0.2.3: .... done [head-amd64-default-job-09] `-- Extracting gettext-runtime-0.19.4: .......... done [head-amd64-default-job-09] Extracting gsed-4.2.2: .......... done ===> R-3.0.2_6 depends on file: /usr/local/bin/gsed - found ===> Returning to build of R-3.0.2_6 ===> R-3.0.2_6 depends on executable: makeinfo - not found ===> Installing existing package /packages/All/texinfo-6.0.20150626.txz [head-amd64-default-job-09] Installing texinfo-6.0.20150626... [head-amd64-default-job-09] `-- Installing perl5-5.20.2_5... [head-amd64-default-job-09] `-- Extracting perl5-5.20.2_5: .......... done [head-amd64-default-job-09] Extracting texinfo-6.0.20150626: .......... done ===> R-3.0.2_6 depends on executable: makeinfo - found ===> Returning to build of R-3.0.2_6 <snip> ** package 'spatial' successfully unpacked and MD5 sums checked ** libs gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c init.c -o init.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c krc.c -o krc.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c pps.c -o pps.o gcc48 -std=gnu99 -fpic -shared -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -o spatial.so init.o krc.o pps.o -L/wrkdirs/usr/ports/math/R/work/R-3.0.2/lib -lR installing to /wrkdirs/usr/ports/math/R/work/R-3.0.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** libs gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c gdi.c -o gdi.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c init.c -o init.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c magic.c -o magic.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c mat.c -o mat.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c matrix.c -o matrix.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c mgcv.c -o mgcv.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c misc.c -o misc.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c qp.c -o qp.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c soap.c -o soap.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c sparse-smooth.c -o sparse-smooth.o gcc48 -std=gnu99 -I/wrkdirs/usr/ports/math/R/work/R-3.0.2/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -c tprs.c -o tprs.o gcc48 -std=gnu99 -fpic -shared -L/usr/local/lib -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -o mgcv.so gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o qp.o soap.o sparse-smooth.o tprs.o -L/wrkdirs/usr/ports/math/R/work/R-3.0.2/lib -lRlapack -L/wrkdirs/usr/ports/math/R/work/R-3.0.2/lib -lRblas -lgfortran -lm -lssp_nonshared -lquadmath -fopenmp -L/wrkdirs/usr/ports/math/R/work/R-3.0.2/lib -lR installing to /wrkdirs/usr/ports/math/R/work/R-3.0.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) 'pdflatex' is needed to make vignettes but is missing on your system. configuring Java ... *** Cannot find any Java interpreter *** Please make sure 'java' is on your PATH or set JAVA_HOME correspondingly *** Error code 1 (ignored) ERROR: 'makeinfo' v4.7 or later needed but missing on your system. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.0.2/doc/manual *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.0.2/doc *** Error code 1 (ignored) =========================================================================== =======================<phase: run-depends >============================ ===> R-3.0.2_6 depends on file: /usr/local/bin/gsed - found ===> R-3.0.2_6 depends on executable: gfortran48 - found ===> R-3.0.2_6 depends on executable: gcc48 - found ===> R-3.0.2_6 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> R-3.0.2_6 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> R-3.0.2_6 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> R-3.0.2_6 depends on executable: gs - not found ===> Installing existing package /packages/All/ghostscript9-9.06_10.txz [head-amd64-default-job-09] Installing ghostscript9-9.06_10... [head-amd64-default-job-09] `-- Installing cups-image-2.0.3_2... [head-amd64-default-job-09] | `-- Installing cups-client-2.0.3_2... [head-amd64-default-job-09] | | `-- Installing gnutls-3.3.15... [head-amd64-default-job-09] | | `-- Installing ca_root_nss-3.19.1_1... [head-amd64-default-job-09] | | `-- Extracting ca_root_nss-3.19.1_1: ....... done [head-amd64-default-job-09] | | `-- Installing libidn-1.29... [head-amd64-default-job-09] | | `-- Extracting libidn-1.29: .......... done [head-amd64-default-job-09] | | `-- Installing libtasn1-4.5_1... [head-amd64-default-job-09] | | `-- Extracting libtasn1-4.5_1: .......... done [head-amd64-default-job-09] | | `-- Installing nettle-2.7.1... [head-amd64-default-job-09] | | `-- Extracting nettle-2.7.1: .......... done [head-amd64-default-job-09] | | `-- Installing p11-kit-0.23.1... [head-amd64-default-job-09] | | `-- Extracting p11-kit-0.23.1: .......... done [head-amd64-default-job-09] | | `-- Installing trousers-tddl-0.3.10_7... ===> Creating users and/or groups. Creating group '_tss' with gid '601'. Creating user '_tss' with uid '601'. [head-amd64-default-job-09] | | `-- Extracting trousers-tddl-0.3.10_7: .......... done [head-amd64-default-job-09] | | `-- Extracting gnutls-3.3.15: .......... done [head-amd64-default-job-09] | | `-- Installing libgcrypt-1.6.3... [head-amd64-default-job-09] | | `-- Installing libgpg-error-1.19_1... [head-amd64-default-job-09] | | `-- Extracting libgpg-error-1.19_1: .......... done [head-amd64-default-job-09] | | `-- Extracting libgcrypt-1.6.3: .......... done [head-amd64-default-job-09] | | `-- Installing mDNSResponder-567... [head-amd64-default-job-09] | | `-- Extracting mDNSResponder-567: .......... done ===> Creating users and/or groups. Creating group 'cups' with gid '193'. Creating user 'cups' with uid '193'. [head-amd64-default-job-09] | `-- Extracting cups-client-2.0.3_2: .......... done ===> Creating users and/or groups. Using existing group 'cups'. Using existing user 'cups'. [head-amd64-default-job-09] `-- Extracting cups-image-2.0.3_2: .......... done [head-amd64-default-job-09] `-- Installing gsfonts-8.11_6... [head-amd64-default-job-09] `-- Extracting gsfonts-8.11_6: .......... done [head-amd64-default-job-09] `-- Installing jbig2dec-0.11_4... [head-amd64-default-job-09] `-- Extracting jbig2dec-0.11_4: .......... done [head-amd64-default-job-09] `-- Installing lcms2-2.7... [head-amd64-default-job-09] `-- Extracting lcms2-2.7: .......... done [head-amd64-default-job-09] `-- Installing libpaper-1.1.24.4... [head-amd64-default-job-09] `-- Extracting libpaper-1.1.24.4: .......... done [head-amd64-default-job-09] `-- Installing svgalib-1.4.3_7... [head-amd64-default-job-09] `-- Extracting svgalib-1.4.3_7: .......... done [head-amd64-default-job-09] Extracting ghostscript9-9.06_10: .......... done Message for ca_root_nss-3.19.1_1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message for trousers-tddl-0.3.10_7: To run tcsd automatically, add the following line to /etc/rc.conf tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. To use TPM, add your_account to '_tss' group like following: # pw groupadd _tss -m your_account Message for ghostscript9-9.06_10: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.06/Resource/Init have to be configured if you want to use FAPI feature. ===> R-3.0.2_6 depends on executable: gs - found ===> Returning to build of R-3.0.2_6 ===> R-3.0.2_6 depends on executable: indexinfo - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-3.0.2_6 ===> Generating temporary packing list mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R installing doc ... mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/share/doc/R installing doc/html ... mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/share/doc/R/html installing doc/manual ... mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/share/doc/R/manual mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/etc installing etc ... installing share ... mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/R mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/dictionaries mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/encodings mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/java mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/licenses mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/make mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/sh mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf/bibtex mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf/bibtex/bib mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf/bibtex/bst mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf/tex mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/share/texmf/tex/latex mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/bin mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/include mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/include/R_ext mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/lib gcc48 -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -I/usr/local/include -DLIBICONV_PLUG -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -DR_HOME='"/usr/local/lib/R"' -o Rscript ./Rscript.c mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/bin/exec mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/modules mkdir /wrkdirs/usr/ports/math/R/work/stage/usr/local/lib/R/library installing packages ... building HTML index ... install: R-FAQ.info*: No such file or directory *** Error code 71 Stop. make: stopped in /usr/ports/math/R
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