From owner-svn-ports-head@freebsd.org Fri Apr 12 17:01:12 2019 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 1C4221581392; Fri, 12 Apr 2019 17:01:12 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id AC2B18347E; Fri, 12 Apr 2019 17:01:11 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 3203D244DA; Fri, 12 Apr 2019 17:01:11 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x3CH1BBn065826; Fri, 12 Apr 2019 17:01:11 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x3CH1AS8065823; Fri, 12 Apr 2019 17:01:10 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201904121701.x3CH1AS8065823@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Fri, 12 Apr 2019 17:01:10 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r498729 - in head/biology: . py-xenaPython X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology: . py-xenaPython X-SVN-Commit-Revision: 498729 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: AC2B18347E X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.95 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.95)[-0.953,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US]; NEURAL_HAM_LONG(-1.00)[-1.000,0] X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 12 Apr 2019 17:01:12 -0000 Author: yuri Date: Fri Apr 12 17:01:10 2019 New Revision: 498729 URL: https://svnweb.freebsd.org/changeset/ports/498729 Log: New port: biology/py-xenaPython: API for Xena Hub to access genetic information shared through the hub Added: head/biology/py-xenaPython/ head/biology/py-xenaPython/Makefile (contents, props changed) head/biology/py-xenaPython/distinfo (contents, props changed) head/biology/py-xenaPython/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Apr 12 16:47:41 2019 (r498728) +++ head/biology/Makefile Fri Apr 12 17:01:10 2019 (r498729) @@ -123,6 +123,7 @@ SUBDIR += py-orange3-single-cell SUBDIR += py-pyfaidx SUBDIR += py-pysam + SUBDIR += py-xenaPython SUBDIR += pycogent SUBDIR += pyfasta SUBDIR += python-nexus Added: head/biology/py-xenaPython/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-xenaPython/Makefile Fri Apr 12 17:01:10 2019 (r498729) @@ -0,0 +1,19 @@ +# $FreeBSD$ + +PORTNAME= xenaPython +DISTVERSION= 1.0.10 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= API for Xena Hub to access genetic information shared through the hub + +LICENSE= APACHE20 + +USES= python +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include Added: head/biology/py-xenaPython/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-xenaPython/distinfo Fri Apr 12 17:01:10 2019 (r498729) @@ -0,0 +1,3 @@ +TIMESTAMP = 1555087462 +SHA256 (xenaPython-1.0.10.tar.gz) = 1ace9085ef603a4099977e5319fce59251c8853327ddb59b84e8e3065cd80052 +SIZE (xenaPython-1.0.10.tar.gz) = 11062 Added: head/biology/py-xenaPython/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-xenaPython/pkg-descr Fri Apr 12 17:01:10 2019 (r498729) @@ -0,0 +1,9 @@ +Python API for Xena Hub. + +Xena Hub is a Java-based server software installed on the clients' servers +that hosts their genomic data in order to share it with others. Using this +Python API and other browsers that are part of the UC Santa Cruz Xena project, +it is possible to easily access a wide variety of genomic information shared by +a large number of researchers. + +WWW: https://github.com/ucscXena/xenaPython