Date: Sun, 5 Apr 2015 17:55:36 +0000 (UTC) From: Baptiste Daroussin <bapt@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r383309 - in head/biology: consed migrate ncbi-blast+ njplot ortep3 p5-Bio-ASN1-EntrezGene paml platon povchem seaview Message-ID: <201504051755.t35Hta64060664@svn.freebsd.org>
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Author: bapt Date: Sun Apr 5 17:55:35 2015 New Revision: 383309 URL: https://svnweb.freebsd.org/changeset/ports/383309 Log: Mark as broken unfetchable ports Modified: head/biology/consed/Makefile head/biology/migrate/Makefile head/biology/ncbi-blast+/Makefile head/biology/njplot/Makefile head/biology/ortep3/Makefile head/biology/p5-Bio-ASN1-EntrezGene/Makefile head/biology/paml/Makefile head/biology/platon/Makefile head/biology/povchem/Makefile head/biology/seaview/Makefile Modified: head/biology/consed/Makefile ============================================================================== --- head/biology/consed/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/consed/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}_linux MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Graphical tool for editing Phrap assemblies +BROKEN= Unfetchable + RUN_DEPENDS= phred:${PORTSDIR}/biology/phred \ phrap:${PORTSDIR}/biology/phrap Modified: head/biology/migrate/Makefile ============================================================================== --- head/biology/migrate/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/migrate/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}.src MAINTAINER= ports@FreeBSD.org COMMENT= Program to estimate population sizes and migration rates +BROKEN= unfetchable + GNU_CONFIGURE= yes CONFIGURE_ENV= ac_cv_prog_GMAKE="${MAKE}" MAKE_ARGS= PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu \ Modified: head/biology/ncbi-blast+/Makefile ============================================================================== --- head/biology/ncbi-blast+/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/ncbi-blast+/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -12,6 +12,8 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= jwbacon@tds.net COMMENT= NCBI implementation of Basic Local Alignment Search Tool +BROKEN= Unfetchable + LICENSE= Public_domain LICENSE_NAME= Public Domain LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE Modified: head/biology/njplot/Makefile ============================================================================== --- head/biology/njplot/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/njplot/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -10,6 +10,8 @@ MASTER_SITES= ftp://pbil.univ-lyon1.fr/p MAINTAINER= mzaki@m.u-tokyo.ac.jp COMMENT= Phylogenetic tree drawing program capable of interactive manipulation +BROKEN= Unfetchable + OPTIONS_DEFINE= DOCS X11 OPTIONS_DEFAULT= DOCS X11 Modified: head/biology/ortep3/Makefile ============================================================================== --- head/biology/ortep3/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/ortep3/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -13,6 +13,8 @@ EXTRACT_ONLY= ortep.tar.Z MAINTAINER= ports@FreeBSD.org COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure +BROKEN= Unfetchable + PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot USES= fortran Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile ============================================================================== --- head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -11,6 +11,8 @@ PKGNAMEPREFIX= p5- MAINTAINER= mauricio@arareko.net COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene +BROKEN= Unfetchable + WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09 USES= perl5 tar:tgz Modified: head/biology/paml/Makefile ============================================================================== --- head/biology/paml/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/paml/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= jrm@ftfl.ca COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) +BROKEN= Unfetchable + USES= gmake tar:tgz WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" Modified: head/biology/platon/Makefile ============================================================================== --- head/biology/platon/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/platon/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -16,6 +16,7 @@ COMMENT= Tool for viewing molecular/crys # There is a charge of US$ 5000 for commercial users. NO_CDROM= free for academic, US$ 5000 for commercial users +BROKEN= Unfetchable USES= fortran USE_XORG= x11 Modified: head/biology/povchem/Makefile ============================================================================== --- head/biology/povchem/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/povchem/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -17,6 +17,7 @@ COMMENT= Simple yet powerful tool to gen RUN_DEPENDS= povray:${PORTSDIR}/graphics/povray-meta +BROKEN= Unfetchable NO_WRKSUBDIR= yes USES= dos2unix Modified: head/biology/seaview/Makefile ============================================================================== --- head/biology/seaview/Makefile Sun Apr 5 17:29:01 2015 (r383308) +++ head/biology/seaview/Makefile Sun Apr 5 17:55:35 2015 (r383309) @@ -14,6 +14,8 @@ COMMENT= Multiple DNA/protein sequence a LICENSE= GPLv3 +BROKEN= Unfetchable + LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk \ libpng.so:${PORTSDIR}/graphics/png
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