Skip site navigation (1)Skip section navigation (2)
Date:      Fri, 18 Jan 2019 14:35:40 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv7-default][science/tinker] Failed for tinker-8.5.3 in build
Message-ID:  <201901181435.x0IEZemb031695@beefy16.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/science/tinker/Makefile 490442 2019-01-16 04:36:12Z yuri $
Log URL:        http://beefy16.nyi.freebsd.org/data/head-armv7-default/p490523_s343106/logs/tinker-8.5.3.log
Build URL:      http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p490523_s343106
Log:

=>> Building science/tinker
build started at Fri Jan 18 13:59:00 UTC 2019
port directory: /usr/ports/science/tinker
package name: tinker-8.5.3
building for: FreeBSD head-armv7-default-job-08 13.0-CURRENT FreeBSD 13.0-CURRENT 1300008 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/tinker/Makefile 490442 2019-01-16 04:36:12Z yuri $
Poudriere version: 3.2.8
Host OSVERSION: 1300002
Jail OSVERSION: 1300008
Job Id: 08




!!! Jail is newer than host. (Jail: 1300008, Host: 1300002) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv7
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1300008
UNAME_v=FreeBSD 13.0-CURRENT 1300008
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
QEMU_EMULATING=1
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8
MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for tinker-8.5.3:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
     OPTIMIZED_FFLAGS=off: compilation optimizations
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work  HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
HAVE_G2C=yes F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/tinker/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/tinker/work  HOME=/wrkdirs/usr/ports/science/tinker/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/tinker/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="/nxb-bin/us
 r/bin/cpp" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/tinker"  EXAMPLESDIR="share/examples/tinker"  DATADIR="share/tinker"  WWWDIR="www/tinker"  ETCDIR="etc/tinker"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/tinker DOCSDIR=/usr/local/share/doc/tinker EXAMPLESDIR=/usr/local/share/examples/tinker  WWWDIR=/usr/local/www/tinker ETCDIR=/usr/local/etc/tinker
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_f2776b26=yes
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=yes
_OBJC_CCVERSION_9d218390=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_OBJC_ALTCCVERSION_9d218390=none
ARCH=armv7
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300008
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License TINKER accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   tinker-8.5.3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv7-default-job-08] Installing pkg-1.10.5_5...
[head-armv7-default-job-08] Extracting pkg-1.10.5_5: .......... done
===>   tinker-8.5.3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of tinker-8.5.3
<snip>
a - kurybr.o
a - kvdw.o
a - kvdwpr.o
a - kvdws.o
a - lattice.o
a - lbfgs.o
a - light.o
a - lights.o
a - limits.o
a - linmin.o
a - makeint.o
a - makeref.o
a - makexyz.o
a - math.o
a - maxwell.o
a - mdinit.o
a - mdrest.o
a - mdsave.o
a - mdstat.o
a - mdstuf.o
a - mechanic.o
a - merck.o
a - merge.o
a - minima.o
a - molcul.o
a - moldyn.o
a - molecule.o
a - moment.o
a - moments.o
a - mplpot.o
a - mpole.o
a - mrecip.o
a - mutant.o
a - mutate.o
a - nblist.o
a - neigh.o
a - nextarg.o
a - nexttext.o
a - nonpol.o
a - nose.o
a - nspline.o
a - nucleo.o
a - number.o
a - numeral.o
a - numgrad.o
a - ocvm.o
a - omega.o
a - opbend.o
a - opdist.o
a - openend.o
a - openmp.o
a - optinit.o
a - optsave.o
a - orbital.o
a - orbits.o
a - orient.o
a - orthog.o
a - output.o
a - overlap.o
a - params.o
a - paths.o
a - pbstuf.o
a - pdb.o
a - phipsi.o
a - picalc.o
a - piorbs.o
a - pistuf.o
a - pitors.o
a - pme.o
a - pmestuf.o
a - pmpb.o
a - polar.o
a - polgrp.o
a - polopt.o
a - polpcg.o
a - polpot.o
a - poltcg.o
a - polymer.o
a - potent.o
a - potfit.o
a - precis.o
a - precise.o
a - pressure.o
a - prmkey.o
a - promo.o
a - prtdyn.o
a - prterr.o
a - prtint.o
a - prtmol2.o
a - prtpdb.o
a - prtprm.o
a - prtseq.o
a - prtxyz.o
a - ptable.o
a - qmstuf.o
a - qrfact.o
a - quatfit.o
a - random.o
a - rattle.o
a - readdyn.o
a - readgau.o
a - readgdma.o
a - readint.o
a - readmol.o
a - readmol2.o
a - readpdb.o
a - readprm.o
a - readseq.o
a - readxyz.o
a - refer.o
a - repel.o
a - replica.o
a - reppot.o
a - resdue.o
a - respa.o
a - restrn.o
a - rgddyn.o
a - rgdstep.o
a - rigid.o
a - ring.o
a - rings.o
a - rmsfit.o
a - rotbnd.o
a - rotlist.o
a - rotpole.o
a - rxnfld.o
a - rxnpot.o
a - scales.o
a - sdstep.o
a - search.o
a - sequen.o
a - server.o
a - shakeup.o
a - shunt.o
a - sigmoid.o
a - simplex.o
a - sizes.o
a - sktstuf.o
a - socket.o
a - solute.o
a - sort.o
a - square.o
a - stodyn.o
a - strbnd.o
a - strtor.o
a - suffix.o
a - surface.o
a - surfatom.o
a - switch.o
a - syntrn.o
a - tarray.o
a - tcgstuf.o
a - temper.o
a - titles.o
a - tncg.o
a - torphase.o
a - torpot.o
a - torque.o
a - tors.o
a - torsions.o
a - tortor.o
a - tree.o
a - trimtext.o
a - unitcell.o
a - units.o
a - uprior.o
a - urey.o
a - urypot.o
a - usage.o
a - valfit.o
a - vdw.o
a - vdwpot.o
a - verlet.o
a - version.o
a - vibs.o
a - virial.o
a - volume.o
a - warp.o
a - xtals.o
a - xyzatm.o
a - zatom.o
a - zclose.o
a - zcoord.o
ranlib libtinker.a
gfortran -Ofast  -fopenmp -static-libgcc -o alchemy.x -L. -L/wrkdirs/usr/ports/science/tinker/work/tinker/lib/macos -L/wrkdirs/usr/ports/science/tinker/work/tinker/fftw/lib alchemy.o libtinker.a  -lfftw3_threads -lfftw3; strip alchemy.x
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_ul2d@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_idivmod@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_idiv@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_uidiv@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_uidivmod@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_ldivmod@GCC_3.5'
/usr/local/lib/gcc8/gcc/armv7-portbld-freebsd13.0/8.2.0/../../../libgfortran.so: undefined reference to `__aeabi_uldivmod@GCC_3.5'
collect2: error: ld returned 1 exit status
strip: open alchemy.x failed: No such file or directory
gmake[1]: *** [/wrkdirs/usr/ports/science/tinker/work/tinker/make/Makefile:777: alchemy.x] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/tinker/work/tinker/source'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/tinker



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201901181435.x0IEZemb031695>