Date: Thu, 16 Jan 2025 12:41:19 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 25e2eac767b4 - main - biology/bbmap: Update to 39.15 Message-ID: <202501161241.50GCfJZn084476@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=25e2eac767b4fbfe69d5307fc027c5cfb8f44b77 commit 25e2eac767b4fbfe69d5307fc027c5cfb8f44b77 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2025-01-16 12:35:49 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2025-01-16 12:35:49 +0000 biology/bbmap: Update to 39.15 Add bitbucket link to WWW for some level of change tracking Release highlights: https://bitbucket.org/berkeleylab/jgi-bbtools/commits/branch/master Reported by: portscout --- biology/bbmap/Makefile | 5 +++-- biology/bbmap/distinfo | 6 +++--- biology/bbmap/pkg-plist | 10 ++++++++++ 3 files changed, 16 insertions(+), 5 deletions(-) diff --git a/biology/bbmap/Makefile b/biology/bbmap/Makefile index 7eb55b35a9e3..f9adfeb4db4f 100644 --- a/biology/bbmap/Makefile +++ b/biology/bbmap/Makefile @@ -1,5 +1,5 @@ PORTNAME= bbmap -DISTVERSION= 39.14 +DISTVERSION= 39.15 CATEGORIES= biology java MASTER_SITES= SF/bbmap/ DISTNAME= BBMap_${PORTVERSION} @@ -7,7 +7,8 @@ DISTNAME= BBMap_${PORTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= BBMap short read aligner, and other bioinformatic tools WWW= https://jgi.doe.gov/data-and-tools/bbtools/ \ - https://sourceforge.net/projects/bbmap/ + https://sourceforge.net/projects/bbmap/ \ + https://bitbucket.org/berkeleylab/jgi-bbtools/src/master/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt diff --git a/biology/bbmap/distinfo b/biology/bbmap/distinfo index c2f5a721063f..1bec09ddc1f9 100644 --- a/biology/bbmap/distinfo +++ b/biology/bbmap/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1736804942 -SHA256 (BBMap_39.14.tar.gz) = 87f7746dee28629afb368530457e7d2dfaabb4f8c5967dba4269d9a724f78e30 -SIZE (BBMap_39.14.tar.gz) = 12469315 +TIMESTAMP = 1737030117 +SHA256 (BBMap_39.15.tar.gz) = b6698469a2a90f4930537c575ff1f70332f88a933dd5e286c83ea0ff30802344 +SIZE (BBMap_39.15.tar.gz) = 12498916 diff --git a/biology/bbmap/pkg-plist b/biology/bbmap/pkg-plist index d67fce64164a..1515769118ae 100644 --- a/biology/bbmap/pkg-plist +++ b/biology/bbmap/pkg-plist @@ -533,11 +533,21 @@ libexec/bbmap/webcheck.sh %%JAVAJARDIR%%/bbmap/bin/Cluster.java %%JAVAJARDIR%%/bbmap/bin/Contig.class %%JAVAJARDIR%%/bbmap/bin/Contig.java +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$ProcessThread.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer$Scaf.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.class +%%JAVAJARDIR%%/bbmap/bin/ContigRenamer.java %%JAVAJARDIR%%/bbmap/bin/DataLoader.class %%JAVAJARDIR%%/bbmap/bin/DataLoader.java +%%JAVAJARDIR%%/bbmap/bin/FileRenamer.class +%%JAVAJARDIR%%/bbmap/bin/FileRenamer.java %%JAVAJARDIR%%/bbmap/bin/QuickBin$ProcessThread.class %%JAVAJARDIR%%/bbmap/bin/QuickBin.class %%JAVAJARDIR%%/bbmap/bin/QuickBin.java +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$Genome.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG$ProcessThread.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.class +%%JAVAJARDIR%%/bbmap/bin/RandomReadsMG.java %%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.class %%JAVAJARDIR%%/bbmap/bin/SimilarityMeasures.java %%JAVAJARDIR%%/bbmap/bin/SketchRecord.class
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