From owner-svn-ports-head@freebsd.org Thu Aug 20 17:07:04 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 81C923C3292; Thu, 20 Aug 2020 17:07:04 +0000 (UTC) (envelope-from kevans@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BXWKN2hZZz4gKx; Thu, 20 Aug 2020 17:07:04 +0000 (UTC) (envelope-from kevans@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 40C1C17AC0; Thu, 20 Aug 2020 17:07:04 +0000 (UTC) (envelope-from kevans@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 07KH74UA001083; Thu, 20 Aug 2020 17:07:04 GMT (envelope-from kevans@FreeBSD.org) Received: (from kevans@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 07KH7434001082; Thu, 20 Aug 2020 17:07:04 GMT (envelope-from kevans@FreeBSD.org) Message-Id: <202008201707.07KH7434001082@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: kevans set sender to kevans@FreeBSD.org using -f From: Kyle Evans Date: Thu, 20 Aug 2020 17:07:04 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r545542 - head/biology/paml/files X-SVN-Group: ports-head X-SVN-Commit-Author: kevans X-SVN-Commit-Paths: head/biology/paml/files X-SVN-Commit-Revision: 545542 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 20 Aug 2020 17:07:04 -0000 Author: kevans Date: Thu Aug 20 17:07:03 2020 New Revision: 545542 URL: https://svnweb.freebsd.org/changeset/ports/545542 Log: biology/paml: fix the build with LLVM 11 LLVM 11 switched from -fcommon to -fno-common by default. This revealed a slight misposition of names in paml.h, which caused one symbol per enum that's not used anywhere. The fix just moves the names back so that the enums are named that, rather than creating new unused symbols. Reviewed by: zeising Approved by: jrm (maintainer) MFH: 2020Q3 Added: head/biology/paml/files/ head/biology/paml/files/patch-src_paml.h (contents, props changed) Added: head/biology/paml/files/patch-src_paml.h ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/paml/files/patch-src_paml.h Thu Aug 20 17:07:03 2020 (r545542) @@ -0,0 +1,14 @@ +--- src/paml.h.orig 2020-08-20 16:14:50 UTC ++++ src/paml.h +@@ -372,9 +372,9 @@ void copySptree(void); + void printSptree(void); + + +-enum {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq} SeqTypes; ++enum SeqTypes {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq}; + +-enum {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32} OutTreeOptions; ++enum OutTreeOptions {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32}; + + + /* use mean (0; default) for discrete gamma instead of median (1) */