From owner-freebsd-python@FreeBSD.ORG Tue Aug 28 06:00:16 2012 Return-Path: <owner-freebsd-python@FreeBSD.ORG> Delivered-To: freebsd-python@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 27D0B1065673 for <freebsd-python@hub.freebsd.org>; Tue, 28 Aug 2012 06:00:16 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id ECDEB8FC0C for <freebsd-python@hub.freebsd.org>; Tue, 28 Aug 2012 06:00:15 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.5/8.14.5) with ESMTP id q7S60F92088115 for <freebsd-python@freefall.freebsd.org>; Tue, 28 Aug 2012 06:00:15 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.5/8.14.5/Submit) id q7S60Ff7088114; Tue, 28 Aug 2012 06:00:15 GMT (envelope-from gnats) Date: Tue, 28 Aug 2012 06:00:15 GMT Message-Id: <201208280600.q7S60Ff7088114@freefall.freebsd.org> To: freebsd-python@FreeBSD.org From: Mauricio Herrera Cuadra <mauricio@arareko.net> Cc: Subject: Re: ports/171115: [Update]biology/py-biopython:update to 1.60 X-BeenThere: freebsd-python@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list Reply-To: Mauricio Herrera Cuadra <mauricio@arareko.net> List-Id: FreeBSD-specific Python issues <freebsd-python.freebsd.org> List-Unsubscribe: <http://lists.freebsd.org/mailman/listinfo/freebsd-python>, <mailto:freebsd-python-request@freebsd.org?subject=unsubscribe> List-Archive: <http://lists.freebsd.org/pipermail/freebsd-python> List-Post: <mailto:freebsd-python@freebsd.org> List-Help: <mailto:freebsd-python-request@freebsd.org?subject=help> List-Subscribe: <http://lists.freebsd.org/mailman/listinfo/freebsd-python>, <mailto:freebsd-python-request@freebsd.org?subject=subscribe> X-List-Received-Date: Tue, 28 Aug 2012 06:00:16 -0000 The following reply was made to PR ports/171115; it has been noted by GNATS. From: Mauricio Herrera Cuadra <mauricio@arareko.net> To: "bug-followup@FreeBSD.org" <bug-followup@FreeBSD.org>, Wen Heping <wen@FreeBSD.org> Cc: Edwin Groothuis <edwin@freebsd.org> Subject: Re: ports/171115: [Update]biology/py-biopython:update to 1.60 Date: Mon, 27 Aug 2012 22:55:12 -0700 (PDT) --258328648-757781644-1346133312=:36231 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable The patch for the Makefile doesn't work right:=0A=0A[root@freebsd9-vm] /usr= /ports/biology/py-biopython # patch < Makefile.diff =0AHmm...=A0 Looks like= a unified diff to me...=0AThe text leading up to this was:=0A-------------= -------------=0A|--- Makefile.orig=A0=A0=A0=A0=A0=A0 2012-08-27 15:39:19.00= 0000000 +0800=0A|+++ Makefile=A0=A0=A0 2012-08-27 11:29:53.000000000 +0800= =0A--------------------------=0APatching file Makefile using Plan A...=0Apa= tch: **** unexpected end of file in patch=0A=0A=0APlease put the diff for a= ll the port in a single file and submit again. Thanks.=0AMauricio=0A=0A=0A= =0A________________________________=0A From: Edwin Groothuis <edwin@FreeBSD= .org>=0ATo: mauricio@arareko.net =0ACc: bug-followup@FreeBSD.org =0ASent: M= onday, August 27, 2012 7:10 AM=0ASubject: Re: ports/171115: [Update]biology= /py-biopython:update to 1.60=0A =0AMaintainer of biology/py-biopython,=0A= =0APlease note that PR ports/171115 has just been submitted.=0A=0AIf it con= tains a patch for an upgrade, an enhancement or a bug fix=0Ayou agree on, r= eply to this email stating that you approve the patch=0Aand a committer wil= l take care of it.=0A=0AThe full text of the PR can be found at:=0A=A0 =A0 = http://www.freebsd.org/cgi/query-pr.cgi?pr=3Dports/171115=0A=0A-- =0AEdwin = Groothuis via the GNATS Auto Assign Tool=0Aedwin@FreeBSD.org --258328648-757781644-1346133312=:36231 Content-Type: text/html; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable <html><body><div style=3D"color:#000; background-color:#fff; font-family:ti= mes new roman, new york, times, serif;font-size:12pt"><div><span>The patch = for the Makefile doesn't work right:</span></div><div style=3D"color: rgb(0= , 0, 0); font-size: 16px; font-family: times new roman,new york,times,serif= ; background-color: transparent; font-style: normal;"><br><span></span></di= v><div style=3D"color: rgb(0, 0, 0); font-size: 16px; font-family: times ne= w roman,new york,times,serif; background-color: transparent; font-style: no= rmal;"><span>[root@freebsd9-vm] /usr/ports/biology/py-biopython # patch <= ; Makefile.diff <br>Hmm... Looks like a unified diff to me...<br>The = text leading up to this was:<br>--------------------------<br>|--- Makefile= .orig 2012-08-27 15:39:19.000000000 +08= 00<br>|+++ Makefile 2012-08-27 11:29:53.000000000 +0800<b= r>--------------------------<br>Patching file Makefile using Plan A...<br>patch: **** unexpected end of file in patch<br></span></div><div><= br></div><div>Please put the diff for all the port in a single file and sub= mit again. Thanks.</div><div>Mauricio<br></div><div style=3D"color: rgb(0, = 0, 0); font-size: 16px; font-family: times new roman,new york,times,serif; = background-color: transparent; font-style: normal;"><br></div> <div style= =3D"font-family: times new roman, new york, times, serif; font-size: 12pt;"= > <div style=3D"font-family: times new roman, new york, times, serif; font-= size: 12pt;"> <div dir=3D"ltr"> <font face=3D"Arial" size=3D"2"> <hr size= =3D"1"> <b><span style=3D"font-weight:bold;">From:</span></b> Edwin Grooth= uis <edwin@FreeBSD.org><br> <b><span style=3D"font-weight: bold;">To:= </span></b> mauricio@arareko.net <br><b><span style=3D"font-weight: bold;">= Cc:</span></b> bug-followup@FreeBSD.org <br> <b><span style=3D"font-weight:= bold;">Sent:</span></b> Monday, August 27, 2012 7:10 AM<br> <b><span style= =3D"font-weight: bold;">Subject:</span></b> Re: ports/171115: [Update]biology/py-biopython:= update to 1.60<br> </font> </div> <br>Maintainer of biology/py-biopython,<b= r><br>Please note that PR ports/171115 has just been submitted.<br><br>If i= t contains a patch for an upgrade, an enhancement or a bug fix<br>you agree= on, reply to this email stating that you approve the patch<br>and a commit= ter will take care of it.<br><br>The full text of the PR can be found at:<b= r> <a href=3D"http://www.freebsd.org/cgi/query-pr.cgi?pr=3Dpor= ts/171115" target=3D"_blank">http://www.freebsd.org/cgi/query-pr.cgi?pr=3Dp= orts/171115</a><br><br>-- <br>Edwin Groothuis via the GNATS Auto Assign Too= l<br><a ymailto=3D"mailto:edwin@FreeBSD.org" href=3D"mailto:edwin@FreeBSD.o= rg">edwin@FreeBSD.org</a><br><br><br> </div> </div> </div></body></html> --258328648-757781644-1346133312=:36231--