From owner-svn-ports-head@freebsd.org Fri Jul 24 07:08:07 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 569483720B6; Fri, 24 Jul 2020 07:08:07 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4BCgJl0cdVz3Wbj; Fri, 24 Jul 2020 07:08:07 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C61592653D; Fri, 24 Jul 2020 07:08:06 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 06O7863n041743; Fri, 24 Jul 2020 07:08:06 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 06O786Ed041739; Fri, 24 Jul 2020 07:08:06 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <202007240708.06O786Ed041739@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Fri, 24 Jul 2020 07:08:06 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r543011 - in head/biology: . rubygem-bio-old-biofetch-emulator X-SVN-Group: ports-head X-SVN-Commit-Author: sunpoet X-SVN-Commit-Paths: in head/biology: . rubygem-bio-old-biofetch-emulator X-SVN-Commit-Revision: 543011 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 24 Jul 2020 07:08:07 -0000 Author: sunpoet Date: Fri Jul 24 07:08:05 2020 New Revision: 543011 URL: https://svnweb.freebsd.org/changeset/ports/543011 Log: Add rubygem-bio-old-biofetch-emulator 1.0.0 bio-old-biofetch-emulator emulates Bio::Fetch object in BioRuby as if discontinued BioRuby BioFetch server were still alive. It overrides methods and objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp). WWW: https://github.com/ngoto/bioruby-old-biofetch-emulator Added: head/biology/rubygem-bio-old-biofetch-emulator/ head/biology/rubygem-bio-old-biofetch-emulator/Makefile (contents, props changed) head/biology/rubygem-bio-old-biofetch-emulator/distinfo (contents, props changed) head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Jul 24 07:08:00 2020 (r543010) +++ head/biology/Makefile Fri Jul 24 07:08:05 2020 (r543011) @@ -149,6 +149,7 @@ SUBDIR += ruby-bio SUBDIR += rubygem-bio SUBDIR += rubygem-bio-executables + SUBDIR += rubygem-bio-old-biofetch-emulator SUBDIR += samtools SUBDIR += scrm SUBDIR += seaview Added: head/biology/rubygem-bio-old-biofetch-emulator/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/Makefile Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,22 @@ +# Created by: Po-Chuan Hsieh +# $FreeBSD$ + +PORTNAME= bio-old-biofetch-emulator +PORTVERSION= 1.0.0 +CATEGORIES= biology rubygems +MASTER_SITES= RG + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Emulate Bio::Fetch object + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +RUN_DEPENDS= rubygem-bio>=1.4.2:biology/rubygem-bio + +USES= gem +USE_RUBY= yes + +NO_ARCH= yes + +.include Added: head/biology/rubygem-bio-old-biofetch-emulator/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/distinfo Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,3 @@ +TIMESTAMP = 1595416509 +SHA256 (rubygem/bio-old-biofetch-emulator-1.0.0.gem) = 2cebae441cd8d680cbf76df5301b7d45a3d086974cdc016b9148a15dfb8b6d8b +SIZE (rubygem/bio-old-biofetch-emulator-1.0.0.gem) = 11264 Added: head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,7 @@ +bio-old-biofetch-emulator emulates Bio::Fetch object in BioRuby as if +discontinued BioRuby BioFetch server were still alive. It overrides methods and +objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it +intercepts all requests and converts them into existing web services such as +TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp). + +WWW: https://github.com/ngoto/bioruby-old-biofetch-emulator