From owner-svn-ports-head@freebsd.org Wed Jan 13 16:30:09 2021 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E2AA34E1B65; Wed, 13 Jan 2021 16:30:09 +0000 (UTC) (envelope-from thierry@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DGCbP5rwYz4tsW; Wed, 13 Jan 2021 16:30:09 +0000 (UTC) (envelope-from thierry@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B75E51A6AD; Wed, 13 Jan 2021 16:30:09 +0000 (UTC) (envelope-from thierry@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 10DGU9eM020489; Wed, 13 Jan 2021 16:30:09 GMT (envelope-from thierry@FreeBSD.org) Received: (from thierry@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 10DGU7tO020479; Wed, 13 Jan 2021 16:30:07 GMT (envelope-from thierry@FreeBSD.org) Message-Id: <202101131630.10DGU7tO020479@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: thierry set sender to thierry@FreeBSD.org using -f From: Thierry Thomas Date: Wed, 13 Jan 2021 16:30:07 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r561487 - in head/science/v_sim: . files X-SVN-Group: ports-head X-SVN-Commit-Author: thierry X-SVN-Commit-Paths: in head/science/v_sim: . files X-SVN-Commit-Revision: 561487 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 13 Jan 2021 16:30:10 -0000 Author: thierry Date: Wed Jan 13 16:30:07 2021 New Revision: 561487 URL: https://svnweb.freebsd.org/changeset/ports/561487 Log: Upgrade to 3.8.0. Changelog is available at . Added: head/science/v_sim/files/patch-Documentation_reference_Makefile.am (contents, props changed) head/science/v_sim/files/patch-configure.ac (contents, props changed) head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c (contents, props changed) head/science/v_sim/files/patch-m4_libxc.m4 (contents, props changed) head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c (contents, props changed) Deleted: head/science/v_sim/files/patch-lib_plug-ins_Makefile.in Modified: head/science/v_sim/Makefile head/science/v_sim/distinfo head/science/v_sim/pkg-descr head/science/v_sim/pkg-plist Modified: head/science/v_sim/Makefile ============================================================================== --- head/science/v_sim/Makefile Wed Jan 13 16:13:24 2021 (r561486) +++ head/science/v_sim/Makefile Wed Jan 13 16:30:07 2021 (r561487) @@ -2,10 +2,9 @@ # $FreeBSD$ PORTNAME= v_sim -PORTVERSION= 3.7.2 -PORTREVISION= 12 +PORTVERSION= 3.8.0 CATEGORIES= science -MASTER_SITES= http://inac.cea.fr/sp2m/L_Sim/V_Sim/download/ +MASTER_SITES= https://gitlab.com/l_sim/${PORTNAME}/-/archive/${PORTVERSION}/ MAINTAINER= thierry@FreeBSD.org COMMENT= Visualization of atomic structures @@ -15,26 +14,56 @@ LICENSE_NAME= CeCILL LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept +BUILD_DEPENDS= p5-XML-LibXML>0:textproc/p5-XML-LibXML \ + libarchive>0:archivers/libarchive \ + xcrysden:science/xcrysden \ + bash:shells/bash LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \ + libopenbabel.so:science/openbabel \ libfreetype.so:print/freetype2 \ - libftgl.so:graphics/ftgl + libyaml.so:textproc/libyaml \ + libnetcdf.so:science/netcdf \ + libmsym.so:science/libmsym \ + libftgl.so:graphics/ftgl \ + libxc.so:science/libxc +RUN_DEPENDS= ${PYNUMPY} \ + xcrysden:science/xcrysden \ + libarchive>0:archivers/libarchive \ + ${PYTHON_PKGNAMEPREFIX}gobject3>0:devel/py-gobject3@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR} -USES= compiler:c11 fortran gl gmake gnome libtool localbase:ldflags \ - pkgconfig tar:bzip2 xorg +USES= autoreconf blaslapack compiler:c11 fortran gl gmake gnome \ + libtool:keepla localbase:ldflags pkgconfig python:3.6+ \ + shebangfix tar:bzip2 xorg +SHEBANG_GLOB= *.py USE_XORG= x11 -USE_GNOME= gtk20 intltool cairo +USE_GNOME= cairo gtk30 intltool introspection USE_GL= gl glu GNU_CONFIGURE= yes -CONFIGURE_ARGS= --disable-gtk-doc --with-html-dir=${PREFIX}/share/doc --disable-python-module +CONFIGURE_SHELL=${LOCALBASE}/bin/bash +CONFIGURE_ARGS= --htmldir=${PREFIX}/share/doc --with-openbabel \ + --with-netcdf=${LOCALBASE} --with-etsf-file-format \ + --with-xsf --with-cube --with-msym=${LOCALBASE} \ + --with-msym-inc=-I${LOCALBASE}/include/libmsym \ + --with-libxc=${LOCALBASE} --enable-python-module CPPFLAGS+= ${CFLAGS} USE_LDCONFIG= yes INSTALLS_ICONS= yes -INSTALL_TARGET= install-strip OPTIONS_DEFINE= DOCS NLS EXAMPLES +.if defined(WITH_DEBUG) +CONFIGURE_ARGS+=--enable-debug-messages +.endif + .include +.if ${ARCH:Mamd64*} +BUILD_DEPENDS+= abinit:science/abinit +RUN_DEPENDS+= abinit:science/abinit +CONFIGURE_ARGS+=--with-abinit +.endif + .if ${PORT_OPTIONS:MNLS} USES+= gettext PLIST_SUB+= NLS="" @@ -43,45 +72,23 @@ USES+= gettext-tools PLIST_SUB+= NLS="@comment " .endif -.if !defined(WITHOUT_CDF) -LIB_DEPENDS+= libnetcdf.so:science/netcdf -CONFIGURE_ARGS+=--with-netcdf=${LOCALBASE} -PLIST_SUB+= CDF="" -.else -CONFIGURE_ARGS+=--without-netcdf -PLIST_SUB+= CDF="@comment " -.endif - -.if !defined(WITHOUT_BABEL) -LIB_DEPENDS+= libopenbabel.so:science/openbabel -CONFIGURE_ARGS+=--with-openbabel -PLIST_SUB+= BABEL="" -.else -CONFIGURE_ARGS+=--without-openbabel -PLIST_SUB+= BABEL="@comment " -.endif - pre-configure: - @${REINPLACE_CMD} -e 's|$$datadir/doc/$$PACKAGE/examples|${EXAMPLESDIR}|' \ - -e 's| CFLAGS="-O2"|#CFLAGS="-O2"|;s|Werror ansi pedantic-errors||' \ - -e 's| FCFLAGS="-O2"|FCFLAGS=${FFLAGS}|;s|$${docdir}/examples|${EXAMPLESDIR}|' \ - ${WRKSRC}/${CONFIGURE_SCRIPT} + ${REINPLACE_CMD} -e 's|$${docdir}/examples|${EXAMPLESDIR}|' \ + ${WRKSRC}/configure.ac + ${REINPLACE_CMD} -e 's|print sys.prefix|print (sys.prefix)|' \ + -e 's|print sys.exec_prefix|print (sys.exec_prefix)|' \ + ${WRKSRC}/m4/python.m4 pre-configure-NLS-off: - @${REINPLACE_CMD} -e '/^ po /d' \ - ${WRKSRC}/Makefile.in + ${REINPLACE_CMD} -e '/^ po /d' ${WRKSRC}/Makefile.am pre-configure-DOCS-off: - @${REINPLACE_CMD} -e '/^ Documentation/d' \ - ${WRKSRC}/Makefile.in + ${REINPLACE_CMD} -e '/^ Documentation/d' ${WRKSRC}/Makefile.am pre-configure-EXAMPLES-off: - @${REINPLACE_CMD} -e '/^ examples/d' \ - ${WRKSRC}/Makefile.in - @${FIND} ${WRKSRC}/lib/plug-ins -name Makefile.in | ${XARGS} \ - ${REINPLACE_CMD} -e \ - 's|install-v_simexamplesDATA install-v_simpixmapsDATA|install-v_simpixmapsDATA|' - @${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \ - ${WRKSRC}/lib/python/Makefile.in + ${REINPLACE_CMD} -e '/^ examples/d' \ + ${WRKSRC}/Makefile.am + ${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \ + ${WRKSRC}/lib/python/Makefile.am .include Modified: head/science/v_sim/distinfo ============================================================================== --- head/science/v_sim/distinfo Wed Jan 13 16:13:24 2021 (r561486) +++ head/science/v_sim/distinfo Wed Jan 13 16:30:07 2021 (r561487) @@ -1,2 +1,3 @@ -SHA256 (v_sim-3.7.2.tar.bz2) = 9212e6321d8ad8188529b9fab543268489e2f37d96e3ae55fa90d47d8ba4e70c -SIZE (v_sim-3.7.2.tar.bz2) = 3103269 +TIMESTAMP = 1608928526 +SHA256 (v_sim-3.8.0.tar.bz2) = af23f0eac641017d0ce52d92f83a8bca8f07776c4fac40b1970f073d88096f1f +SIZE (v_sim-3.8.0.tar.bz2) = 5957293 Added: head/science/v_sim/files/patch-Documentation_reference_Makefile.am ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/v_sim/files/patch-Documentation_reference_Makefile.am Wed Jan 13 16:30:07 2021 (r561487) @@ -0,0 +1,34 @@ +--- Documentation/reference/Makefile.am.orig 2020-07-07 14:26:13 UTC ++++ Documentation/reference/Makefile.am +@@ -81,11 +81,11 @@ GTKDOC_LIBS= \ + @GTKS_LIBS@ @GLU_LIBS@ @EXTRA_LDFLAGS@ @EXTRA_LIBS@ + + # This includes the standard gtk-doc make rules, copied by gtkdocize. +-include $(srcdir)/gtk-doc.make ++#include $(srcdir)/gtk-doc.make + + # Other files to distribute + # e.g. EXTRA_DIST += version.xml.in +-EXTRA_DIST += version.in ++EXTRA_DIST = version.in + + # Files not to distribute + # for --rebuild-types in $(SCAN_OPTIONS), e.g. $(DOC_MODULE).types +@@ -93,11 +93,11 @@ EXTRA_DIST += version.in + DISTCLEANFILES = $(DOC_MODULE).types $(DOC_MODULE)-sections.txt + + # Comment this out if you want your docs-status tested during 'make check' +-if ENABLE_GTK_DOC +-TESTS_ENVIRONMENT = \ +- DOC_MODULE=$(DOC_MODULE) DOC_MAIN_SGML_FILE=$(DOC_MAIN_SGML_FILE) \ +- SRCDIR=$(abs_srcdir) BUILDDIR=$(abs_builddir) +-TESTS = $(GTKDOC_CHECK) +-endif ++#if ENABLE_GTK_DOC ++#TESTS_ENVIRONMENT = \ ++# DOC_MODULE=$(DOC_MODULE) DOC_MAIN_SGML_FILE=$(DOC_MAIN_SGML_FILE) \ ++# SRCDIR=$(abs_srcdir) BUILDDIR=$(abs_builddir) ++#TESTS = $(GTKDOC_CHECK) ++#endif + + #-include $(top_srcdir)/git.mk Added: head/science/v_sim/files/patch-configure.ac ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/v_sim/files/patch-configure.ac Wed Jan 13 16:30:07 2021 (r561487) @@ -0,0 +1,61 @@ +--- configure.ac.orig 2020-07-07 14:26:13 UTC ++++ configure.ac +@@ -244,7 +244,7 @@ AC_ARG_ENABLE(python-module, AS_HELP_STRING([--enable- + if test -n "$enable_python" -a "$enable_python" != "no" ; then + AM_PATH_PYTHON(2.3.5) + AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR(could not find Python headers)]) +- py_prefix=`$PYTHON -c "import sys; print sys.prefix"` ++ py_prefix=`$PYTHON -c "import sys; print (sys.prefix)"` + PYTHON_INCLUDES="-I${py_prefix}/include/python${PYTHON_VERSION}" + + PKG_CHECK_MODULES(PYGTK, pygobject-2.0 pygtk-2.0, [have_pygtk=yes], [have_pygtk=no]) +@@ -269,7 +269,6 @@ if test "$with_debug_messages" = "yes" ; then + fi + + dnl Building the doc +-GTK_DOC_CHECK([1.3]) + + + dnl Test for plug-ins compilation +@@ -423,9 +422,9 @@ if test "x$enable_introspection" = "xyes" ; then + dnl Add Python support for the PythonGI plug-in. + AM_PATH_PYTHON(2.3) + AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR(could not find Python headers)]) +- PYTHON_INCLUDES="`python-config --cflags`" ++ PYTHON_INCLUDES="`${PYTHON}-config --cflags`" + AC_SUBST(PYTHON_INCLUDES) +- PYTHON_LIBS="`python-config --libs`" ++ PYTHON_LIBS="`${PYTHON}-config --libs`" + AC_SUBST(PYTHON_LIBS) + + AC_MSG_CHECKING(for pygobject overrides directory) +@@ -434,9 +433,10 @@ if test "x$enable_introspection" = "xyes" ; then + if test "x$overrides_dir" = "x" ; then + overrides_dir="${pyexecdir}/gi/overrides" + fi +- if ! test -w $overrides_dir ; then +- overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides +- fi ++ # Do not test -w $overrides_dir to allow build as non-root ++ #if ! test -w $overrides_dir ; then ++ # overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides ++ #fi + AC_MSG_RESULT($overrides_dir) + else + overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides +@@ -446,12 +446,12 @@ AM_CONDITIONAL([WITH_GOBJECT_INTROSPECTION], [test "x$ + dnl AC_PROG_CC set the CC variable and detect if we use the GNU compiler + dnl We now append some various CFLAGS depending on platform and choice + dnl of the user. +-AC_ARG_WITH(strict-cflags, AS_HELP_STRING([--with-strict-cflags], [if set or absent some correctness cflags are appended to the CFLAGS variable. Appended values dependent on the platform and code branch (default on Unix for development is Wall Wno-unused W Werror ansi pedantic-errors).]), [STRICT_CFLAGS=$withval], [STRICT_CFLAGS="no"]) ++AC_ARG_WITH(strict-cflags, AS_HELP_STRING([--with-strict-cflags], [if set or absent some correctness cflags are appended to the CFLAGS variable. Appended values dependent on the platform and code branch (default on Unix for development is Wall Wno-unused W ansi ).]), [STRICT_CFLAGS=$withval], [STRICT_CFLAGS="no"]) + flags='Wall W ansi' + flags_cpp='Wall W ansi' + if test "$GCC" = "yes" -a "$STRICT_CFLAGS" = "yes"; then +- flags=$flags' Werror Wpedantic std=c99' +- flags_cpp=$flags_cpp' Werror Wpedantic' ++ flags=$flags' std=c99' ++ flags_cpp=$flags_cpp' ' + fi + for fl in $flags ; do + case " $CFLAGS " in Added: head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c Wed Jan 13 16:30:07 2021 (r561487) @@ -0,0 +1,59 @@ +--- lib/plug-ins/abinit/ab_symmetry.c.orig 2020-07-07 14:26:13 UTC ++++ lib/plug-ins/abinit/ab_symmetry.c +@@ -458,7 +458,7 @@ gpointer startThreadSymmetry(gpointer data _U_) + char *spGrp; + double box[3][3], genAfm[3], *xred; + int i, *typat, grpId, grpMagnId; +- AbError errno; ++ AbError error; + VisuNodeArrayIter iter; + + AbinitData *dt; +@@ -492,13 +492,13 @@ gpointer startThreadSymmetry(gpointer data _U_) + /* Ask for the calculation of the symmetries. */ + DBG_fprintf(stderr, "AB symmetry(%p): Ready to get symmetries from ABINIT.\n", + (gpointer)g_thread_self()); +- errno = ab_symmetry_get_group(dt->sym, &spGrp, &grpId, ++ error = ab_symmetry_get_group(dt->sym, &spGrp, &grpId, + &grpMagnId, genAfm); + DBG_fprintf(stderr, "AB symmetry(%p): return from ABINIT (%d).\n", +- (gpointer)g_thread_self(), errno); +- if (errno == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED) ++ (gpointer)g_thread_self(), error); ++ if (error == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED) + g_free(spGrp); +- else if (errno != AB_ERROR_SYM_NOT_PRIMITIVE) ++ else if (error != AB_ERROR_SYM_NOT_PRIMITIVE) + dt->error = g_error_new(TOOL_FILE_FORMAT_ERROR, TOOL_FILE_FORMAT_ERROR_METHOD, + "An error occured in ABINIT plug-in."); + abinit_mutexUnlock(); +@@ -517,7 +517,7 @@ static void updateSymmetries(VisuData *dataObj, gdoubl + gchar *bravais[7] = {"triclinic", "monoclinic", "orthorhombic", + "tetragonal", "trigonal", "hexagonal", "cubic"}; + gchar *center[7] = {"F", "F", "I", "P", "A", "B", "C"}; +- AbError errno; ++ AbError error; + #ifdef G_THREADS_ENABLED + GThread *ld_thread; + #endif +@@ -571,9 +571,9 @@ static void updateSymmetries(VisuData *dataObj, gdoubl + + /* We get then the space group. */ + DBG_fprintf(stderr, "AB symmetry: get group.\n"); +- errno = ab_symmetry_get_group(sym, &spGrp, &grpId, ++ error = ab_symmetry_get_group(sym, &spGrp, &grpId, + &grpMagnId, genAfm); +- if (errno == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED) ++ if (error == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED) + { + str = g_strdup_printf("%s (#%d)", spGrp, grpId); + gtk_label_set_text(GTK_LABEL(lblSymId), str); +@@ -629,7 +629,7 @@ static void updateSymmetries(VisuData *dataObj, gdoubl + + /* If the bravais lattice doesn't match with the xred bravais + lattice, we print a message. */ +- if (errno == AB_ERROR_SYM_BRAVAIS_XRED) ++ if (error == AB_ERROR_SYM_BRAVAIS_XRED) + gtk_widget_show(lblSymWarning); + else + gtk_widget_hide(lblSymWarning); Added: head/science/v_sim/files/patch-m4_libxc.m4 ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/v_sim/files/patch-m4_libxc.m4 Wed Jan 13 16:30:07 2021 (r561487) @@ -0,0 +1,22 @@ +--- m4/libxc.m4.orig 2020-07-07 14:26:13 UTC ++++ m4/libxc.m4 +@@ -57,17 +57,13 @@ AC_DEFUN([AC_CHECK_LIBXC], + + LIBS="$LIBS -lxc" + AC_MSG_CHECKING([for LIBXC library]) +- AC_LINK_IFELSE([[ +-program main +- +- call xc_f90_family_from_id() +-end]], ac_libxc_ok=yes, ac_libxc_ok=no) ++ ac_libxc_ok=yes + AC_MSG_RESULT([$ac_libxc_ok]) + LIBS="$LIBS_SVG" + LDFLAGS="$LDFLAGS_SVG" + FCFLAGS="$FCFLAGS_SVG" + if test "$ac_libxc_ok" = "yes"; then +- LIBXC_LIBS="-lxc" ++ LIBXC_LIBS="-lxc -lxcf90" + AS_IF([test -n "$LIBXC_PATH_LIBDIR"], [LIBXC_LIBS="-L$LIBXC_PATH_LIBDIR $LIBXC_LIBS"]) + AC_SUBST([LIBXC_LIBS]) + fi Added: head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c Wed Jan 13 16:30:07 2021 (r561487) @@ -0,0 +1,22 @@ +--- src/coreTools/atoms_yaml.c.orig 2020-07-07 14:26:13 UTC ++++ src/coreTools/atoms_yaml.c +@@ -1270,19 +1270,7 @@ static int posinp_yaml_forces(yaml_parser_t *parser, P + + return done; + } +-#if SYSTEM_X11 == 1 +-static char* strdup(const char *src) +-{ +- char *dest; +- size_t ln; + +- ln = strlen(src); +- dest = malloc(sizeof(char) * (ln + 1)); +- memcpy(dest, src, sizeof(char) * ln); +- dest[ln] = '\0'; +- return dest; +-} +-#endif + static int posinp_yaml_external_potential(const PosinpDict *dict, PosinpAtoms *atoms, char **message) + { + int done; Modified: head/science/v_sim/pkg-descr ============================================================================== --- head/science/v_sim/pkg-descr Wed Jan 13 16:13:24 2021 (r561486) +++ head/science/v_sim/pkg-descr Wed Jan 13 16:30:07 2021 (r561487) @@ -6,4 +6,4 @@ choose the view, the size of the atoms, their color, t type of fog... Much of it is detailled in the user guide. Moreover V_Sim allows to export the view as image in GIF, PS or more formats. -WWW: http://inac.cea.fr/L_Sim/V_Sim/ +WWW: https://gitlab.com/l_sim/v_sim Modified: head/science/v_sim/pkg-plist ============================================================================== --- head/science/v_sim/pkg-plist Wed Jan 13 16:13:24 2021 (r561486) +++ head/science/v_sim/pkg-plist Wed Jan 13 16:30:07 2021 (r561487) @@ -1,171 +1,67 @@ bin/v_sim +lib/girepository-1.0/v_sim-3.8.typelib lib/libv_sim-3.a +lib/libv_sim-3.la lib/libv_sim-3.so -lib/libv_sim-3.so.7 -lib/libv_sim-3.so.7.0.0 -%%BABEL%%lib/v_sim/plug-ins/libobloader.a -%%BABEL%%lib/v_sim/plug-ins/libobloader.so -%%BABEL%%lib/v_sim/plug-ins/libobloader.so.7 -%%BABEL%%lib/v_sim/plug-ins/libobloader.so.7.0.0 -%%PORTDOCS%%man/man1/v_sim.1.gz +lib/libv_sim-3.so.8 +lib/libv_sim-3.so.8.0.0 +%%PYTHON_SITELIBDIR%%/gi/overrides/__pycache__/v_sim.cpython-37.opt-1.pyc +%%PYTHON_SITELIBDIR%%/gi/overrides/__pycache__/v_sim.cpython-37.pyc +%%PYTHON_SITELIBDIR%%/gi/overrides/v_sim.py +lib/v_sim/plug-ins/libabinit.a +lib/v_sim/plug-ins/libabinit.la +lib/v_sim/plug-ins/libabinit.so +lib/v_sim/plug-ins/libabinit.so.8 +lib/v_sim/plug-ins/libabinit.so.8.0.0 +lib/v_sim/plug-ins/libarchives.a +lib/v_sim/plug-ins/libarchives.la +lib/v_sim/plug-ins/libarchives.so +lib/v_sim/plug-ins/libarchives.so.8 +lib/v_sim/plug-ins/libarchives.so.8.0.0 +lib/v_sim/plug-ins/libcube.a +lib/v_sim/plug-ins/libcube.la +lib/v_sim/plug-ins/libcube.so +lib/v_sim/plug-ins/libcube.so.8 +lib/v_sim/plug-ins/libcube.so.8.0.0 +lib/v_sim/plug-ins/libetsf.a +lib/v_sim/plug-ins/libetsf.la +lib/v_sim/plug-ins/libetsf.so +lib/v_sim/plug-ins/libetsf.so.8 +lib/v_sim/plug-ins/libetsf.so.8.0.0 +lib/v_sim/plug-ins/libobloader.a +lib/v_sim/plug-ins/libobloader.la +lib/v_sim/plug-ins/libobloader.so +lib/v_sim/plug-ins/libobloader.so.8 +lib/v_sim/plug-ins/libobloader.so.8.0.0 +lib/v_sim/plug-ins/libplugmsym.a +lib/v_sim/plug-ins/libplugmsym.la +lib/v_sim/plug-ins/libplugmsym.so +lib/v_sim/plug-ins/libplugmsym.so.8 +lib/v_sim/plug-ins/libplugmsym.so.8.0.0 +lib/v_sim/plug-ins/libpythongi.a +lib/v_sim/plug-ins/libpythongi.la +lib/v_sim/plug-ins/libpythongi.so +lib/v_sim/plug-ins/libpythongi.so.8 +lib/v_sim/plug-ins/libpythongi.so.8.0.0 +lib/v_sim/plug-ins/libxsf.a +lib/v_sim/plug-ins/libxsf.la +lib/v_sim/plug-ins/libxsf.so +lib/v_sim/plug-ins/libxsf.so.8 +lib/v_sim/plug-ins/libxsf.so.8.0.0 +man/man1/v_sim.1.gz %%PORTDOCS%%%%DOCSDIR%%/ChangeLog.en %%PORTDOCS%%%%DOCSDIR%%/ChangeLog.fr -%%PORTDOCS%%%%DOCSDIR%%/ToolFileFormat.html -%%PORTDOCS%%%%DOCSDIR%%/VisuBox.html -%%PORTDOCS%%%%DOCSDIR%%/VisuData.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExt.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtAxes.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtBg.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtBoxLegend.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtForces.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtFrame.html -%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtInfos.html 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-%%PORTDOCS%%%%DOCSDIR%%/right.png -%%PORTDOCS%%%%DOCSDIR%%/style.css -%%PORTDOCS%%%%DOCSDIR%%/up.png -%%PORTDOCS%%%%DOCSDIR%%/v-sim-VisuBoxed.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-atomic-xyz.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-atomic-yaml.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-cylinder.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dataFile.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dataNode.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpThroughGdkPixbuf.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToABINIT.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToAscii.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToPsAndPdf.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToSVG.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToTiff.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToXyz.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-extraNode.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-geometry.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-about.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-colorComboBoxWidget.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-curveWidget.html 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-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelPlanes.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelSurfaces.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelSurfacesTools.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelVibration.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-plane.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-pot2surf.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic-ascii.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic-d3.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingMode.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingSpin.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces-points.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces-resources.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-text.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolColor.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolConfigFile.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolFortran.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolMatrix.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolOptions.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolPhysic.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolShade.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-vibration.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-actionInterface.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-basic.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-commandLine.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-configFile.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-dump.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-elements.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-gtk.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-openGL.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-plugins.html -%%PORTDOCS%%%%DOCSDIR%%/v-sim-wire.html -%%PORTDOCS%%%%DOCSDIR%%/v_sim.devhelp2 +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ab_silicon.in %%PORTEXAMPLES%%%%EXAMPLESDIR%%/aluminium.d3 +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cinchonidine.xsf.bz2 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cinchonidine.yaml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cnt.Benzen_on_Ag111 +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/collisions.ascii %%PORTEXAMPLES%%%%EXAMPLESDIR%%/coord_vib_g_co.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/demo-browser.tar.gz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/demo.ascii @@ -176,10 +72,22 @@ lib/libv_sim-3.so.7.0.0 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/density-sih4.dat %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diff.ascii %%PORTEXAMPLES%%%%EXAMPLESDIR%%/diff.dat +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/h2o-dens.cube.bz2 +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nq-netcdf.cdl +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nq-netcdf.nc %%PORTEXAMPLES%%%%EXAMPLESDIR%%/planes.xml +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_collisions.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_isolate.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_load.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_plot.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_rightMenu.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_rotate.v_sim.py +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/si1002x1-o_DS1_DEN-etsf.nc +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/silane.nc %%PORTEXAMPLES%%%%EXAMPLESDIR%%/test_isosurfaces.ascii %%PORTEXAMPLES%%%%EXAMPLESDIR%%/test_isosurfaces.surf %%PORTEXAMPLES%%%%EXAMPLESDIR%%/values.xml +share/gir-1.0/v_sim-3.8.gir share/icons/hicolor/16x16/apps/v_sim.png share/icons/hicolor/22x22/apps/v_sim.png share/icons/hicolor/24x24/apps/v_sim.png @@ -188,10 +96,13 @@ share/icons/hicolor/48x48/apps/v_sim.png share/icons/hicolor/scalable/apps/v_sim.svg %%NLS%%share/locale/fr/LC_MESSAGES/v_sim.mo share/pixmaps/v_sim.xpm +%%DATADIR%%/pixmaps/abinit.png +%%DATADIR%%/pixmaps/archives.png %%DATADIR%%/pixmaps/axes-angles.png %%DATADIR%%/pixmaps/axes-box.png %%DATADIR%%/pixmaps/axes-button.png %%DATADIR%%/pixmaps/axes-ortho.png +%%DATADIR%%/pixmaps/cube.png %%DATADIR%%/pixmaps/icone-about.png %%DATADIR%%/pixmaps/icone-dialog.png %%DATADIR%%/pixmaps/icone-observe.png @@ -200,8 +111,11 @@ share/pixmaps/v_sim.xpm %%DATADIR%%/pixmaps/logo_grey.png %%DATADIR%%/pixmaps/logo_petit.png %%DATADIR%%/pixmaps/logo_rectangle.png +%%DATADIR%%/pixmaps/msym.png +%%DATADIR%%/pixmaps/nanoquanta.png %%DATADIR%%/pixmaps/observe-bandeau.png %%DATADIR%%/pixmaps/openbabel.png +%%DATADIR%%/pixmaps/pythongi.png %%DATADIR%%/pixmaps/save-bandeau.png %%DATADIR%%/pixmaps/stock-atomic.png %%DATADIR%%/pixmaps/stock-axes_20.png @@ -224,6 +138,7 @@ share/pixmaps/v_sim.xpm %%DATADIR%%/pixmaps/stock-opengl_20.png %%DATADIR%%/pixmaps/stock-phonons.png %%DATADIR%%/pixmaps/stock-planes_20.png +%%DATADIR%%/pixmaps/stock-pythongi_20.png %%DATADIR%%/pixmaps/stock-select-all_20.png %%DATADIR%%/pixmaps/stock-spin.png %%DATADIR%%/pixmaps/stock-union.png @@ -232,6 +147,7 @@ share/pixmaps/v_sim.xpm %%DATADIR%%/pixmaps/stock_media-play.png %%DATADIR%%/pixmaps/stock_media-stop.png %%DATADIR%%/pixmaps/stock_rotate_20.png +%%DATADIR%%/pixmaps/xsf.png %%DATADIR%%/v_sim.par %%DATADIR%%/v_sim.rc %%DATADIR%%/v_sim.res