From owner-svn-ports-all@freebsd.org Sat Nov 23 14:45:54 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 35D211B78AB; Sat, 23 Nov 2019 14:45:54 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 47Kx1Z0Qqmz483T; Sat, 23 Nov 2019 14:45:54 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id E7BA8D71E; Sat, 23 Nov 2019 14:45:53 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id xANEjrFa075788; Sat, 23 Nov 2019 14:45:53 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id xANEjrUU075787; Sat, 23 Nov 2019 14:45:53 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201911231445.xANEjrUU075787@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Sat, 23 Nov 2019 14:45:53 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r518242 - head/biology/py-cutadapt X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/py-cutadapt X-SVN-Commit-Revision: 518242 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 23 Nov 2019 14:45:54 -0000 Author: jwb Date: Sat Nov 23 14:45:53 2019 New Revision: 518242 URL: https://svnweb.freebsd.org/changeset/ports/518242 Log: biology/py-cutadapt: Upgrade to 2.7 Numerous minor fixes and enhancements. Upstreamed setup.py patches for dependency versions. Reported by: portscout Modified: head/biology/py-cutadapt/Makefile head/biology/py-cutadapt/distinfo Modified: head/biology/py-cutadapt/Makefile ============================================================================== --- head/biology/py-cutadapt/Makefile Sat Nov 23 14:41:38 2019 (r518241) +++ head/biology/py-cutadapt/Makefile Sat Nov 23 14:45:53 2019 (r518242) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= cutadapt -DISTVERSION= 2.5 +DISTVERSION= 2.7 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -13,13 +13,12 @@ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.5.0:archivers/py-xopen@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}dnaio>=0.3:biology/py-dnaio@${PY_FLAVOR} \ - pigz>=0:archivers/pigz +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.8.4:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}dnaio>=0.4.1:biology/py-dnaio@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR} -USES= python:3.4+ +USES= python:3.5+ USE_PYTHON= autoplist concurrent cython distutils post-install: Modified: head/biology/py-cutadapt/distinfo ============================================================================== --- head/biology/py-cutadapt/distinfo Sat Nov 23 14:41:38 2019 (r518241) +++ head/biology/py-cutadapt/distinfo Sat Nov 23 14:45:53 2019 (r518242) @@ -1,3 +1,3 @@ -TIMESTAMP = 1568342520 -SHA256 (cutadapt-2.5.tar.gz) = ced79e49b93e922e579d0bb9d21298dcb2d7b7b1ea721feed484277e08b1660b -SIZE (cutadapt-2.5.tar.gz) = 269321 +TIMESTAMP = 1574517013 +SHA256 (cutadapt-2.7.tar.gz) = 070dec8d94b8bda72906c614b9e71bd61254a67a176dd17e5b57671edd567983 +SIZE (cutadapt-2.7.tar.gz) = 272702