Date: Mon, 28 Aug 2017 11:54:22 +0000 From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 221880] lang/gcc5: py-numpy/python2.7 core dump on FreeBSD 11.1-RELEASE amd64 Message-ID: <bug-221880-13@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D221880 Bug ID: 221880 Summary: lang/gcc5: py-numpy/python2.7 core dump on FreeBSD 11.1-RELEASE amd64 Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: gerald@FreeBSD.org Reporter: amutu@amutu.com Flags: maintainer-feedback?(gerald@FreeBSD.org) Assignee: gerald@FreeBSD.org Created attachment 185841 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D185841&action= =3Dedit tf_demo2.py On fresh installed freebsd 11.1R-amd64: pkg install py27-tensorflow python2.7 ./tf_demo2.py=20 WARNING:tensorflow:Using temporary folder as model directory: /tmp/tmpRJ_b3g WARNING:tensorflow:From /usr/local/lib/python2.7/site-packages/tensorflow/contrib/learn/python/lear= n/estimators/head.py:625: scalar_summary (from tensorflow.python.ops.logging_ops) is deprecated and w= ill be removed after 2016-11-30. Instructions for updating: Please switch to tf.summary.scalar. Note that tf.summary.scalar uses the no= de name instead of the tag. This means that TensorFlow will automatically de-duplicate summary names based on the scope they are created in. Also, passing a tensor or list of tags to a scalar summary op is no longer suppor= ted. WARNING:tensorflow:From /usr/local/lib/python2.7/site-packages/tensorflow/contrib/learn/python/lear= n/estimators/head.py:625: scalar_summary (from tensorflow.python.ops.logging_ops) is deprecated and w= ill be removed after 2016-11-30. Instructions for updating: Please switch to tf.summary.scalar. Note that tf.summary.scalar uses the no= de name instead of the tag. This means that TensorFlow will automatically de-duplicate summary names based on the scope they are created in. Also, passing a tensor or list of tags to a scalar summary op is no longer suppor= ted. Segmentation fault (core dumped) gdb /usr/local/bin/python2.7 ./python2.7.core GNU gdb 6.1.1 [FreeBSD] Copyright 2004 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain condition= s. Type "show copying" to see the conditions. There is absolutely no warranty for GDB. Type "show warranty" for details. This GDB was configured as "amd64-marcel-freebsd"... Core was generated by `python2.7 ./tf_demo2.py'. Program terminated with signal 11, Segmentation fault. Reading symbols from /lib/libthr.so.3...done. Loaded symbols for /lib/libthr.so.3 Reading symbols from /usr/local/lib/libpython2.7.so.1...done. Loaded symbols for /usr/local/lib/libpython2.7.so.1 Reading symbols from /usr/local/lib/libintl.so.8...done. Loaded symbols for /usr/local/lib/libintl.so.8 Reading symbols from /lib/libutil.so.9...done. Loaded symbols for /lib/libutil.so.9 Reading symbols from /lib/libm.so.5...done. Loaded symbols for /lib/libm.so.5 Reading symbols from /lib/libc.so.7...done. Loaded symbols for /lib/libc.so.7 Reading symbols from /usr/local/lib/python2.7/lib-dynload/_locale.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_locale.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_ctypes.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_ctypes.so Reading symbols from /usr/local/lib/libffi.so.6...done. Loaded symbols for /usr/local/lib/libffi.so.6 Reading symbols from /usr/local/lib/python2.7/lib-dynload/_struct.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_struct.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/math.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/math.so Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/core/multiarray.so Reading symbols from /usr/local/lib/libblas.so.2...done. Loaded symbols for /usr/local/lib/libblas.so.2 Reading symbols from /usr/local/lib/libcblas.so.2...done. Loaded symbols for /usr/local/lib/libcblas.so.2 Reading symbols from /usr/local/lib/gcc5/libgfortran.so.3...Error while rea= ding shared library symbols: Dwarf Error: wrong version in compilation unit header (is 4, should be 2) [= in module /usr/local/lib/gcc5/libgfortran.so.3] Reading symbols from /usr/local/lib/gcc5/libgcc_s.so.1...Error while reading shared library symbols: Dwarf Error: wrong version in compilation unit header (is 4, should be 2) [= in module /usr/local/lib/gcc5/libgcc_s.so.1] Reading symbols from /usr/local/lib/gcc5/libquadmath.so.0...Error while rea= ding shared library symbols: Dwarf Error: wrong version in compilation unit header (is 4, should be 2) [= in module /usr/local/lib/gcc5/libquadmath.so.0] Reading symbols from /usr/local/lib/python2.7/lib-dynload/datetime.so...don= e. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/datetime.so Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/core/umath.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/core/umath.= so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_collections.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_collections.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/operator.so...don= e. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/operator.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/itertools.so...do= ne. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/itertools.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_heapq.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_heapq.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/cPickle.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/cPickle.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/cStringIO.so...do= ne. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/cStringIO.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_functools.so...d= one. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_functools.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/time.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/time.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/grp.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/grp.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_io.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_io.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/binascii.so...don= e. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/binascii.so Reading symbols from /lib/libz.so.6...done. Loaded symbols for /lib/libz.so.6 Reading symbols from /usr/local/lib/python2.7/lib-dynload/_hashlib.so...don= e. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_hashlib.so Reading symbols from /usr/lib/libssl.so.8...done. Loaded symbols for /usr/lib/libssl.so.8 Reading symbols from /lib/libcrypto.so.8...done. Loaded symbols for /lib/libcrypto.so.8 Reading symbols from /usr/local/lib/python2.7/lib-dynload/_random.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_random.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/fcntl.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/fcntl.so Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so Reading symbols from /usr/local/lib/liblapack.so.4...done. Loaded symbols for /usr/local/lib/liblapack.so.4 Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/linalg/_umath_linalg.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/future_builtins.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/future_builtins.so Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/fft/fftpack_lite.so Reading symbols from /usr/local/lib/python2.7/site-packages/numpy/random/mtrand.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/numpy/random/mtrand.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/python/_pywrap_tensorflow= _internal.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/python/_pywrap_tensorflow= _internal.so Reading symbols from /usr/lib/libc++.so.1...done. Loaded symbols for /usr/lib/libc++.so.1 Reading symbols from /lib/libcxxrt.so.1...done. Loaded symbols for /lib/libcxxrt.so.1 Reading symbols from /usr/local/lib/python2.7/lib-dynload/strop.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/strop.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/zlib.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/zlib.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_socket.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_socket.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_ssl.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_ssl.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_json.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_json.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/select.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/select.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/cudnn_rnn/python/= ops/_cudnn_rnn_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/cudnn_rnn/python/= ops/_cudnn_rnn_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/factorization/pyt= hon/ops/_clustering_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/factorization/pyt= hon/ops/_clustering_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/factorization/pyt= hon/ops/_factorization_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/factorization/pyt= hon/ops/_factorization_ops.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_csv.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_csv.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/layers/python/ops= /_sparse_feature_cross_op.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/layers/python/ops= /_sparse_feature_cross_op.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/input_pipeline/py= thon/ops/_input_pipeline_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/input_pipeline/py= thon/ops/_input_pipeline_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/rnn/python/ops/_g= ru_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/rnn/python/ops/_g= ru_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/rnn/python/ops/_l= stm_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/rnn/python/ops/_l= stm_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/image/python/ops/= _image_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/image/python/ops/= _image_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/image/python/ops/= _single_image_random_dot_stereograms.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/image/python/ops/= _single_image_random_dot_stereograms.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/array.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/array.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_bisect.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_bisect.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/_multiprocessing.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/_multiprocessing.so Reading symbols from /usr/local/lib/python2.7/lib-dynload/parser.so...done. Loaded symbols for /usr/local/lib/python2.7/lib-dynload/parser.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/memory_stats/pyth= on/ops/_memory_stats_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/memory_stats/pyth= on/ops/_memory_stats_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/nccl/python/ops/_= nccl_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/nccl/python/ops/_= nccl_ops.so Reading symbols from /usr/lib/librt.so.1...done. Loaded symbols for /usr/lib/librt.so.1 Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/seq2seq/python/op= s/_beam_search_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/seq2seq/python/op= s/_beam_search_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/tensor_forest/pyt= hon/ops/_tensor_forest_ops.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/tensor_forest/pyt= hon/ops/_tensor_forest_ops.so Reading symbols from /usr/local/lib/python2.7/site-packages/tensorflow/contrib/tfprof/python/too= ls/tfprof/_pywrap_tensorflow_print_model_analysis_lib.so...done. Loaded symbols for /usr/local/lib/python2.7/site-packages/tensorflow/contrib/tfprof/python/too= ls/tfprof/_pywrap_tensorflow_print_model_analysis_lib.so Reading symbols from /libexec/ld-elf.so.1...done. Loaded symbols for /libexec/ld-elf.so.1 #0 0x0000000803beac19 in ?? () from /usr/local/lib/gcc5/libgcc_s.so.1 (gdb) bt #0 0x0000000803beac19 in ?? () from /usr/local/lib/gcc5/libgcc_s.so.1 #1 0x0000000000000000 in ?? 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