Date: Sat, 21 Mar 2020 23:03:05 +0000 (UTC) From: Mateusz Piotrowski <0mp@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r528886 - in head: . biology biology/linux-foldingathome biology/linux-foldingathome/files biology/linux-foldingathome/scripts Message-ID: <202003212303.02LN359c084228@repo.freebsd.org>
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Author: 0mp Date: Sat Mar 21 23:03:05 2020 New Revision: 528886 URL: https://svnweb.freebsd.org/changeset/ports/528886 Log: Resurrect biology/linux-foldingathome Special thanks to netchild for inspiring bringing back this piece software to ports! Reviewed by: netchild, pi, salvadore Differential Revision: https://reviews.freebsd.org/D24127 Added: head/biology/linux-foldingathome/ - copied from r514600, head/biology/linux-foldingathome/ head/biology/linux-foldingathome/files/ head/biology/linux-foldingathome/files/fahclient.in (contents, props changed) head/biology/linux-foldingathome/files/pkg-message.in (contents, props changed) head/biology/linux-foldingathome/pkg-plist (contents, props changed) Deleted: head/biology/linux-foldingathome/scripts/ Modified: head/GIDs head/LEGAL head/MOVED head/UIDs head/biology/Makefile head/biology/linux-foldingathome/Makefile head/biology/linux-foldingathome/distinfo Modified: head/GIDs ============================================================================== --- head/GIDs Sat Mar 21 22:56:12 2020 (r528885) +++ head/GIDs Sat Mar 21 23:03:05 2020 (r528886) @@ -186,7 +186,7 @@ prosody:*:242: ot-recorder:*:243: mastodon:*:244: routinator:*:245: -# free: 246 +fahclient:*:246:fahclient fcron:*:247: # free: 248 # free: 249 Modified: head/LEGAL ============================================================================== --- head/LEGAL Sat Mar 21 22:56:12 2020 (r528885) +++ head/LEGAL Sat Mar 21 23:03:05 2020 (r528886) @@ -77,6 +77,7 @@ etqw* games/linux-etqw-demo-server Redistribution li etqw* games/linux-etqw-server Redistribution limited ezmlm-* mail/ezmlm No license -- see http://cr.yp.to/softwarelaw.html ezmlm-* mail/ezmlm-idx No license -- see http://cr.yp.to/softwarelaw.html +fahclient-* biology/linux-foldingathome Distribution without permission is prohibited fasta2* biology/fasta May not be sold or incorporated into a commercial product fasta3* biology/fasta3 May not be sold or incorporated into a commercial product festival/festlex_OALD* audio/festlex-oald No commercial use Modified: head/MOVED ============================================================================== --- head/MOVED Sat Mar 21 22:56:12 2020 (r528885) +++ head/MOVED Sat Mar 21 23:03:05 2020 (r528886) @@ -13089,7 +13089,6 @@ audio/wmsmixer||2019-10-16|Has expired: Unfetchable, u audio/xmms2-scrobbler||2019-10-16|Has expired: Unfetchable, unmaintained benchmarks/filebench||2019-10-16|Has expired: Unfetchable, unmaintained biology/chemeq||2019-10-16|Has expired: Unfetchable, unmaintained -biology/linux-foldingathome||2019-10-16|Has expired: Unfetchable, unmaintained cad/dxf2fig||2019-10-16|Has expired: Unfetchable, unmaintained comms/gsmlib||2019-10-16|Has expired: Unfetchable, unmaintained comms/nokryptia||2019-10-16|Has expired: Unfetchable, unmaintained Modified: head/UIDs ============================================================================== --- head/UIDs Sat Mar 21 22:56:12 2020 (r528885) +++ head/UIDs Sat Mar 21 23:03:05 2020 (r528886) @@ -191,7 +191,7 @@ prosody:*:242:242::0:0:Prosody Jabber Server:/nonexist ot-recorder:*:243:243::0:0:OwnTracks Recorder:/nonexistent:/usr/sbin/nologin mastodon:*:244:244::0:0:Mastodon User:/usr/local/www/mastodon:/bin/sh routinator:*:245:245::0:0:Routinator 3000 Pseudo User:/nonexistent:/usr/sbin/nologin -# free: 246 +fahclient:*:246:246::0:0:Folding@home User:/nonexistent:/usr/sbin/nologin fcron:*:247:247::0:0:fcron pseudo-user:/nonexistent:/usr/sbin/nologin # free: 248 # free: 249 Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sat Mar 21 22:56:12 2020 (r528885) +++ head/biology/Makefile Sat Mar 21 23:03:05 2020 (r528886) @@ -68,6 +68,7 @@ SUBDIR += libbigwig SUBDIR += libgtextutils SUBDIR += libsbml + SUBDIR += linux-foldingathome SUBDIR += mafft SUBDIR += mapm3 SUBDIR += migrate Modified: head/biology/linux-foldingathome/Makefile ============================================================================== --- head/biology/linux-foldingathome/Makefile Wed Oct 16 15:29:20 2019 (r514600) +++ head/biology/linux-foldingathome/Makefile Sat Mar 21 23:03:05 2020 (r528886) @@ -2,41 +2,65 @@ # $FreeBSD$ PORTNAME= foldingathome -PORTVERSION= 5.04 -CATEGORIES= biology -MASTER_SITES= http://www.stanford.edu/group/pandegroup/release/ +DISTVERSION= 7.5.1-1 +CATEGORIES= biology linux +MASTER_SITES= https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v${DISTVERSION:R}/ PKGNAMEPREFIX= linux- -DISTNAME= FAH${PORTVERSION:S/.//}-Linux -EXTRACT_SUFX= .exe +DISTNAME= fahclient-${DISTVERSION} +EXTRACT_SUFX= .x86_64.rpm -MAINTAINER= ports@FreeBSD.org -COMMENT= Distributed client for Protein Folding +MAINTAINER= 0mp@FreeBSD.org +COMMENT= Folding@home Client -BROKEN= unfetchable -DEPRECATED= Unfetchable, unmaintained -EXPIRATION_DATE= 2019-10-16 +LICENSE= FAHSL +LICENSE_NAME= Folding@home Software License +LICENSE_FILE= ${WRKSRC}/usr/share/doc/fahclient/copyright +LICENSE_PERMS= no-dist-mirror no-dist-sell no-pkg-mirror no-pkg-sell \ + auto-accept -USES= linux -ONLY_FOR_ARCHS= i386 amd64 -REINPLACE_ARGS= -PLIST_FILES= share/${PORTNAME}/${DISTNAME}${EXTRACT_SUFX} \ - bin/FoldingAtHome +LEGAL_TEXT= Distribution without permission is prohibited -do-extract: - ${MKDIR} ${WRKSRC} - ${CP} ${DISTDIR}/${DISTNAME}${EXTRACT_SUFX} ${WRKSRC} +ONLY_FOR_ARCHS= amd64 +ONLY_FOR_ARCHS_REASON= The i386 client has not been ported -do-build: - ${BRANDELF} -t Linux ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX} - ${CHMOD} 755 ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX} +USES= dos2unix linux +DOS2UNIX_FILES= usr/share/doc/fahclient/* +USE_RC_SUBR= fahclient +ETCDIR= ${PREFIX}/etc/fahclient +DOCSDIR= ${PREFIX}/share/doc/fahclient +NO_BUILD= yes + +SUB_FILES= pkg-message +SUB_LIST= FAHCLIENT_CONFIG_XML=${_FAHCLIENT_CONFIG_XML} \ + FAHCLIENT_PROGRAM=${_FAHCLIENT_PROGRAM} \ + FAHCLIENT_WORK_DIR=${_FAHCLIENT_WORK_DIR} +NO_WRKSUBDIR= yes + +USERS= fahclient +GROUPS= fahclient + +PLIST_SUB= FAHCLIENT_WORK_DIR=${_FAHCLIENT_WORK_DIR} + +PORTDOCS= CHANGELOG.md README.md + +OPTIONS_DEFINE= DOCS + +_FAHCLIENT_CONFIG_XML= ${ETCDIR}/config.xml +_FAHCLIENT_WORK_DIR= /var/db/fahclient +_FAHCLIENT_PROGRAM= ${PREFIX}/bin/FAHClient + do-install: - ${MKDIR} ${STAGEDIR}${PREFIX}/bin - ${REINPLACE_CMD} -e "s|DATADIR|${DATADIR}|" ${SCRIPTDIR}/FoldingAtHome \ - | ${REINPLACE_CMD} -e "s|BINNAME|${DISTNAME}${EXTRACT_SUFX}|" \ - > ${STAGEDIR}${PREFIX}/bin/FoldingAtHome - ${CHMOD} 755 ${STAGEDIR}${PREFIX}/bin/FoldingAtHome - ${MKDIR} ${STAGEDIR}${DATADIR} - ${CP} ${WRKSRC}/${DISTNAME}${EXTRACT_SUFX} ${STAGEDIR}${DATADIR}/ + ${INSTALL_PROGRAM} ${WRKSRC}/usr/bin/FAHClient ${STAGEDIR}${PREFIX}/bin/ + ${INSTALL_PROGRAM} ${WRKSRC}/usr/bin/FAHCoreWrapper ${STAGEDIR}${PREFIX}/bin/ + @${MKDIR} ${STAGEDIR}${ETCDIR} + ${INSTALL_DATA} ${WRKSRC}/usr/share/doc/fahclient/sample-config.xml \ + ${STAGEDIR}${_FAHCLIENT_CONFIG_XML}.sample + @${MKDIR} ${STAGEDIR}${_FAHCLIENT_WORK_DIR} + +post-install-DOCS-on: + @${MKDIR} ${STAGEDIR}${DOCSDIR} + ${INSTALL_MAN} ${PORTDOCS:S|^|${WRKSRC}/usr/share/doc/fahclient/|} \ + ${STAGEDIR}${DOCSDIR} .include <bsd.port.mk> Modified: head/biology/linux-foldingathome/distinfo ============================================================================== --- head/biology/linux-foldingathome/distinfo Wed Oct 16 15:29:20 2019 (r514600) +++ head/biology/linux-foldingathome/distinfo Sat Mar 21 23:03:05 2020 (r528886) @@ -1,2 +1,3 @@ -SHA256 (FAH504-Linux.exe) = c491b23af1edee41db474545c0a084f3f4cf4ccf50bceb56da499df63eb38464 -SIZE (FAH504-Linux.exe) = 250964 +TIMESTAMP = 1584818074 +SHA256 (fahclient-7.5.1-1.x86_64.rpm) = da579fa02df66fc6fb48dc2bc81c4b6f46fe4f6696afe20d70b9bd5e5941837f +SIZE (fahclient-7.5.1-1.x86_64.rpm) = 3025708 Added: head/biology/linux-foldingathome/files/fahclient.in ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/linux-foldingathome/files/fahclient.in Sat Mar 21 23:03:05 2020 (r528886) @@ -0,0 +1,66 @@ +#! /bin/sh - +# +# $FreeBSD$ +# +# SPDX-License-Identifier: BSD-2-Clause +# +# Copyright (c) 2020 Mateusz Piotrowski <0mp@FreeBSD.org> +# +# Redistribution and use in source and binary forms, with or without +# modification, are permitted provided that the following conditions are met: +# +# 1. Redistributions of source code must retain the above copyright notice, +# this list of conditions and the following disclaimer. +# 2. Redistributions in binary form must reproduce the above copyright +# notice, this list of conditions and the following disclaimer in the +# documentation and/or other materials provided with the distribution. +# +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE +# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE +# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR +# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF +# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS +# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN +# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) +# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE +# POSSIBILITY OF SUCH DAMAGE. + +# PROVIDE: fahclient +# REQUIRE: DAEMON LOGIN NETWORKING linux + +. /etc/rc.subr + +name='fahclient' +rcvar='fahclient_enable' + +load_rc_config 'fahclient' + +# Default settings. +: "${fahclient_enable:=NO}" +: "${fahclient_user:=fahclient}" +: "${fahclient_chdir:=%%FAHCLIENT_WORK_DIR%%}" + +: "${fahclient_pidfile:=%%FAHCLIENT_WORK_DIR%%/fahclient.pid}" +: "${fahclient_config:=%%ETCDIR%%/config.xml}" +: "${fahclient_logfile:=%%FAHCLIENT_WORK_DIR%%/log.txt}" + +pidfile="${fahclient_pidfile}" +command='%%FAHCLIENT_PROGRAM%%' +# Some notes on the specified options: +# - --config is necessary to point the program to the correct configuration +# file. +# - --chdir is used to switch to a desired work directory. The program is going +# to create a lot of files in its current working directory so should not be +# just any directory on the system. +# - --pid-file specifies the location for the PID file. +# - --daemon is to detach the program from the terminal and run it +# in the background. +command_args="--config ${fahclient_config} --chdir ${fahclient_chdir}" +command_args="${command_args} --pid-file ${pidfile} --daemon" +extra_commands="log" +log_cmd="tail -F -- ${fahclient_logfile}" +required_modules='linprocfs linsysfs linuxcommon' + +run_rc_command "$1" Added: head/biology/linux-foldingathome/files/pkg-message.in ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/linux-foldingathome/files/pkg-message.in Sat Mar 21 23:03:05 2020 (r528886) @@ -0,0 +1,56 @@ +[ +{ type: install + message: <<EOM +Quick start +=========== + +Here is a list of steps to quickly get started with Folding@home on FreeBSD: + +1. Mount linprocfs(5) in /compat/linux/proc. + +2. Mount linsysfs(5) in /compat/linux/sys. + +3. Enable the fahclient service: + + sysrc fahclient_enable="YES" + +4. Start the service: + + service fahclient start + +At this point, the daemon should be up and folding. + +Additional notes +================ + +- The current status of folding can be inspected by running + the following command: + + service fahclient log + +- The default working directory for fahclient is %%FAHCLIENT_WORK_DIR%%. + In order to function properly, fahclient requires its working directory + to be on a partition/dataset with execute permissions on. For example + if /var/db is on a ZFS dataset with exec=off, then %%FAHCLIENT_WORK_DIR%% + needs to have exec=on. + + Note, that usually the permissions are on unless the system + configuration was modified by the administrator. + +- The ID of the FreeBSD team is 11743. In order to join + the team add the following line to %%FAHCLIENT_CONFIG_XML%%: + + <team value="11743"/> + + The service has to be restarted to pick up the change. + + Statistics for the FreeBSD team can be viewed here: + https://apps.foldingathome.org/teamstats/team11743.html + +- More information about configuring and running the Folding@home + software is available on those websites: + - https://foldingforum.org/ + - https://foldingathome.org/support/faq/ +EOM +} +] Added: head/biology/linux-foldingathome/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/linux-foldingathome/pkg-plist Sat Mar 21 23:03:05 2020 (r528886) @@ -0,0 +1,5 @@ +bin/FAHClient +bin/FAHCoreWrapper +@dir(fahclient,fahclient,) %%ETCDIR%% +@sample(fahclient,fahclient,) %%ETCDIR%%/config.xml.sample +@dir(fahclient,fahclient,) %%FAHCLIENT_WORK_DIR%%
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