From owner-svn-ports-all@freebsd.org Fri Oct 12 14:58:59 2018 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id D007510C0AD3; Fri, 12 Oct 2018 14:58:58 +0000 (UTC) (envelope-from antoine@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 8520785FFB; Fri, 12 Oct 2018 14:58:58 +0000 (UTC) (envelope-from antoine@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 7FFDE20E55; Fri, 12 Oct 2018 14:58:58 +0000 (UTC) (envelope-from antoine@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w9CEwwjG079669; Fri, 12 Oct 2018 14:58:58 GMT (envelope-from antoine@FreeBSD.org) Received: (from antoine@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w9CEwwCB079668; Fri, 12 Oct 2018 14:58:58 GMT (envelope-from antoine@FreeBSD.org) Message-Id: <201810121458.w9CEwwCB079668@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: antoine set sender to antoine@FreeBSD.org using -f From: Antoine Brodin Date: Fri, 12 Oct 2018 14:58:58 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r481907 - head/science/py-DendroPy X-SVN-Group: ports-head X-SVN-Commit-Author: antoine X-SVN-Commit-Paths: head/science/py-DendroPy X-SVN-Commit-Revision: 481907 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 12 Oct 2018 14:58:59 -0000 Author: antoine Date: Fri Oct 12 14:58:58 2018 New Revision: 481907 URL: https://svnweb.freebsd.org/changeset/ports/481907 Log: Fix packaging with python 3.x Reported by: pkg-fallout Modified: head/science/py-DendroPy/pkg-plist Modified: head/science/py-DendroPy/pkg-plist ============================================================================== --- head/science/py-DendroPy/pkg-plist Fri Oct 12 14:58:53 2018 (r481906) +++ head/science/py-DendroPy/pkg-plist Fri Oct 12 14:58:58 2018 (r481907) @@ -2,316 +2,316 @@ bin/sumlabels.py bin/sumtrees.py %%PYTHON_SITELIBDIR%%/dendropy/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/__main__.py %%PYTHON_SITELIBDIR%%/dendropy/__main__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/__main__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/__main__.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/combinatorics.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/mathfn.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/phylogeneticdistance.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/popgenstat.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/probability.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/profiledistance.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/statistics.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/treecompare.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/treemeasure.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/treescore.pyo %%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.py %%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyc -%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/calculate/treesum.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastareader.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/fastawriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioservice.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickreader.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickwriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/newickyielder.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlreader.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlwriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexmlyielder.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusprocessing.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusyielder.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipreader.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylipwriter.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/tokenizer.pyo %%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.py %%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.pyc -%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlprocessing.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/basemodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charmatrixmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/charstatemodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/datasetmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/taxonmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treecollectionmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.py %%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/datamodel/treemodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/ape.py %%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.py %%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.py %%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/ete.py %%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.py %%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.py %%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.py %%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/paup.py %%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.py %%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.py %%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/rspr.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.py %%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/rstats.pyo %%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.py %%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyc -%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/coalescent.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/continuous.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/ncbi.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgensim.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/popgenstat.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/reconcile.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqmodel.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/seqsim.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/treecalc.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/treemanip.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesim.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesplit.pyo %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.py %%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.pyc -%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/legacy/treesum.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.pyc -%%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/mathlib/mathfn.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyc -%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyo %%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.py %%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyc -%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/model/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.py %%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/birthdeath.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.py %%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/coalescent.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/continuous.py %%PYTHON_SITELIBDIR%%/dendropy/model/continuous.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/continuous.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/continuous.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/discrete.py %%PYTHON_SITELIBDIR%%/dendropy/model/discrete.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/discrete.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/discrete.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.py %%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/multispeciescoalescent.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.py %%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/parsimony.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.py %%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/protractedspeciation.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.py %%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/reconcile.pyo %%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.py %%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.pyc -%%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/model/treeshape.pyo %%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/simulate/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.py %%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/simulate/charsim.pyo %%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.py %%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/simulate/popgensim.pyo %%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.py %%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.pyc -%%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/simulate/treesim.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.py %%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.py %%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/bitprocessing.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/cli.py %%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/constants.py %%PYTHON_SITELIBDIR%%/dendropy/utility/constants.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/constants.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/constants.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/container.py %%PYTHON_SITELIBDIR%%/dendropy/utility/container.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/container.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/container.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/debug.py %%PYTHON_SITELIBDIR%%/dendropy/utility/debug.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/debug.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/debug.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.py %%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/deprecate.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/error.py %%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/error.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.py %%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/filesys.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.py %%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/libexec/__init__.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.py %%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.py %%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/metavar.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/processio.py %%PYTHON_SITELIBDIR%%/dendropy/utility/processio.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/processio.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/processio.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.py %%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/terminal.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.py %%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/textprocessing.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.py %%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/timeprocessing.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.py %%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/urlio.pyo %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.py %%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyc -%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.%%PYTHON_PYOEXTENSION%% +%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyo