Date: Fri, 3 Jul 2020 11:22:49 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r541097 - in head/biology/diamond: . files Message-ID: <202007031122.063BMnIW018762@repo.freebsd.org>
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Author: jrm Date: Fri Jul 3 11:22:49 2020 New Revision: 541097 URL: https://svnweb.freebsd.org/changeset/ports/541097 Log: biology/diamond: Update to version 0.9.36 Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.36 Added: head/biology/diamond/files/ head/biology/diamond/files/patch-src_search_collision.cpp (contents, props changed) Modified: head/biology/diamond/Makefile (contents, props changed) head/biology/diamond/distinfo (contents, props changed) Modified: head/biology/diamond/Makefile ============================================================================== --- head/biology/diamond/Makefile Fri Jul 3 10:39:06 2020 (r541096) +++ head/biology/diamond/Makefile Fri Jul 3 11:22:49 2020 (r541097) @@ -2,7 +2,7 @@ PORTNAME= diamond DISTVERSIONPREFIX= v -DISTVERSION= 0.9.35 +DISTVERSION= 0.9.36 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org Modified: head/biology/diamond/distinfo ============================================================================== --- head/biology/diamond/distinfo Fri Jul 3 10:39:06 2020 (r541096) +++ head/biology/diamond/distinfo Fri Jul 3 11:22:49 2020 (r541097) @@ -1,3 +1,3 @@ -TIMESTAMP = 1593274744 -SHA256 (bbuchfink-diamond-v0.9.35_GH0.tar.gz) = 21d25780de6dacf4f965a1c583cf511b19f04def9289387c793e5a175061452d -SIZE (bbuchfink-diamond-v0.9.35_GH0.tar.gz) = 1102711 +TIMESTAMP = 1593736895 +SHA256 (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 870af89606330f6c0b57ed478d2d8237334ce8f5630eac770399ff431948bd59 +SIZE (bbuchfink-diamond-v0.9.36_GH0.tar.gz) = 1104423 Added: head/biology/diamond/files/patch-src_search_collision.cpp ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/diamond/files/patch-src_search_collision.cpp Fri Jul 3 11:22:49 2020 (r541097) @@ -0,0 +1,10 @@ +--- src/search/collision.cpp.orig 2020-07-03 10:58:27 UTC ++++ src/search/collision.cpp +@@ -92,7 +92,6 @@ bool is_primary_hit(const Letter *query, + const unsigned sid, + const unsigned len) + { +- assert(len > 0 && len <= config.window * 2); + const bool chunked(config.lowmem > 1); + uint64_t mask = reduced_match32(query, subject, len); + unsigned i = 0;
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