Date: Sat, 29 Dec 2018 00:36:15 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][biology/hmmer] Failed for hmmer-3.2.1 in build Message-ID: <201812290036.wBT0aFkm072797@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mzaki@niid.go.jp Last committer: swills@FreeBSD.org Ident: $FreeBSD: head/biology/hmmer/Makefile 474455 2018-07-11 15:15:03Z swills $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p488289_s342400/logs/hmmer-3.2.1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p488289_s342400 Log: =>> Building biology/hmmer build started at Sat Dec 29 00:35:26 UTC 2018 port directory: /usr/ports/biology/hmmer package name: hmmer-3.2.1 building for: FreeBSD head-powerpc64-default-job-04 13.0-CURRENT FreeBSD 13.0-CURRENT 1300006 powerpc maintained by: mzaki@niid.go.jp Makefile ident: $FreeBSD: head/biology/hmmer/Makefile 474455 2018-07-11 15:15:03Z swills $ Poudriere version: 3.2.8 Host OSVERSION: 1300005 Jail OSVERSION: 1300006 Job Id: 04 !!! Jail is newer than host. (Jail: 1300006, Host: 1300005) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300006 UNAME_v=FreeBSD 13.0-CURRENT 1300006 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for hmmer-3.2.1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples TEST=off: Build and/or run tests ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- mzaki@niid.go.jp --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hmmer/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hmmer/work HOME=/wrkdirs/usr/ports/biology/hmmer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hmmer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hmmer/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hmmer/work HOME=/wrkdirs/usr/ports/biology/hmmer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hmmer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/hmmer" EXAMPLESDIR="share/examples/hmmer" DATADIR="share/hmmer" WWWDIR="www/hmmer" ETCDIR="etc/hmmer" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hmmer DOCSDIR=/usr/local/share/doc/hmmer EXAMPLESDIR=/usr/local/share/examples/hmmer WWWDIR=/usr/local/www/hmmer ETCDIR=/usr/local/etc/hmmer --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300006 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 19544 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> hmmer-3.2.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-powerpc64-default-job-04] Installing pkg-1.10.5_5... [head-powerpc64-default-job-04] Extracting pkg-1.10.5_5: .......... done ===> hmmer-3.2.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of hmmer-3.2.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by hmmer-3.2.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by hmmer-3.2.1 for building => SHA256 Checksum OK for hmmer-3.2.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by hmmer-3.2.1 for building ===> Extracting for hmmer-3.2.1 => SHA256 Checksum OK for hmmer-3.2.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for hmmer-3.2.1 =========================================================================== =======================<phase: build-depends >============================ <snip> checking for uint64_t... (cached) yes checking for off_t... (cached) yes checking whether byte ordering is bigendian... yes checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... (cached) yes checking for popen... yes checking for putenv... (cached) yes checking for strcasecmp... (cached) yes checking for strsep... (cached) yes checking for times... (cached) yes checking for getpid... (cached) yes checking for sysctl... (cached) yes checking for sysconf... (cached) yes checking for getcwd... (cached) yes checking for chmod... yes checking for stat... (cached) yes checking for fstat... (cached) yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_vmx/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_vmx to src/impl HMMER configuration: compiler: cc -std=gnu99 -O2 -pipe -fno-strict-aliasing -maltivec -pthread host: powerpc64-portbld-freebsd13.0 linker: libraries: DP implementation: vmx Do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. =========================================================================== =======================<phase: build >============================ ===> Building for hmmer-3.2.1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.2.1' gmake -C easel all gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.2.1/easel' cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c easel.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_alloc.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_alphabet.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_arr2.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_arr3.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_buffer.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_cluster.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_composition.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_cpu.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_dirichlet.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_distance.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_dmatrix.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_dsqdata.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_exponential.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_fileparser.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_gamma.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_gencode.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_getopts.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_gev.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_gumbel.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_heap.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_histogram.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_hmm.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_huffman.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_hyperexp.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_keyhash.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_mem.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_minimizer.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_mixgev.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_mpi.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msa.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msacluster.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile2.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_a2m.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_afa.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_clustal.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_phylip.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_psiblast.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_selex.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msafile_stockholm.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msashuffle.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_msaweight.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_normal.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_paml.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_quicksort.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_random.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_randomseq.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_ratematrix.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_recorder.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_red_black.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_regexp.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_rootfinder.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_scorematrix.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_sq.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_sqio.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_sqio_ascii.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_sqio_ncbi.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_ssi.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_stack.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_stats.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_stopwatch.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_stretchexp.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_threads.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_tree.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_vectorops.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_weibull.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_workqueue.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_wuss.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_sse.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_avx.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_avx512.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -c esl_neon.c cc -std=gnu99 -I. -I. -O2 -pipe -fno-strict-aliasing -pthread -maltivec -c esl_vmx.c In file included from esl_vmx.c:43: esl_vmx.h: In function 'esl_vmx_set_float': esl_vmx.h:30: warning: implicit declaration of function 'vec_splats' esl_vmx.h:30: error: incompatible types in assignment esl_vmx.h: In function 'esl_vmx_set_s16': esl_vmx.h:48: error: incompatible types in assignment esl_vmx.h: In function 'esl_vmx_set_u8': esl_vmx.h:66: error: incompatible types in assignment gmake[2]: *** [Makefile:522: esl_vmx.o] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.2.1/easel' gmake[1]: *** [Makefile:90: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.2.1' *** Error code 1 Stop. make: stopped in /usr/ports/biology/hmmer
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