From owner-dev-commits-ports-all@freebsd.org Fri Jun 11 15:05:36 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E6E69660133; Fri, 11 Jun 2021 15:05:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4G1kg468Q7z3hV3; Fri, 11 Jun 2021 15:05:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BA1B624B72; Fri, 11 Jun 2021 15:05:36 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 15BF5a5U089809; Fri, 11 Jun 2021 15:05:36 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 15BF5aa2089808; Fri, 11 Jun 2021 15:05:36 GMT (envelope-from git) Date: Fri, 11 Jun 2021 15:05:36 GMT Message-Id: <202106111505.15BF5aa2089808@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 495634f580bd - main - biology/biolibc: Update to 0.1.3 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 495634f580bdb5bf7020c53ef98d348ad682bb86 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 11 Jun 2021 15:05:37 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=495634f580bdb5bf7020c53ef98d348ad682bb86 commit 495634f580bdb5bf7020c53ef98d348ad682bb86 Author: Jason W. Bacon AuthorDate: 2021-06-11 14:53:49 +0000 Commit: Jason W. Bacon CommitDate: 2021-06-11 15:05:18 +0000 biology/biolibc: Update to 0.1.3 Changes: https://github.com/auerlab/biolibc/releases --- biology/biolibc/Makefile | 13 ++++++++++++- biology/biolibc/distinfo | 6 +++--- biology/biolibc/pkg-plist | 32 +++++++++++++++++++++++++++----- 3 files changed, 42 insertions(+), 9 deletions(-) diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile index dfe7d0a7c32b..9c039b8f1c79 100644 --- a/biology/biolibc/Makefile +++ b/biology/biolibc/Makefile @@ -1,5 +1,7 @@ +# Created by: J. Bacon + PORTNAME= biolibc -DISTVERSION= 0.1.1 +DISTVERSION= 0.1.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -8,7 +10,16 @@ COMMENT= Low-level high-performance bioinformatics library LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE +LIB_DEPENDS= libxtend.so:devel/libxtend + USE_GITHUB= yes +USE_LDCONFIG= yes + GH_ACCOUNT= auerlab +INSTALL_TARGET= install-strip + +pre-build: + (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend) + .include diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo index 353580791bed..2efe35731481 100644 --- a/biology/biolibc/distinfo +++ b/biology/biolibc/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616330997 -SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388 -SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770 +TIMESTAMP = 1623416887 +SHA256 (auerlab-biolibc-0.1.3_GH0.tar.gz) = 746a85a0e5ce9523fb0811cdbb36b4a4c8033190a2deb7e6b7b2566c12769ab7 +SIZE (auerlab-biolibc-0.1.3_GH0.tar.gz) = 30046 diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist index ce0fa3da78f3..5e508df38c26 100644 --- a/biology/biolibc/pkg-plist +++ b/biology/biolibc/pkg-plist @@ -1,6 +1,28 @@ -include/biostring.h -include/dsvio.h -include/samio.h -include/vcfio.h +include/biolibc/bed.h +include/biolibc/biolibc.h +include/biolibc/dsv.h +include/biolibc/gff.h +include/biolibc/plist.h +include/biolibc/sam-buff.h +include/biolibc/sam.h +include/biolibc/vcf.h lib/libbiolibc.a -man/man1/biolibc.1.gz +lib/libbiolibc.so +lib/libbiolibc.so.2 +lib/libbiolibc.so.2.0 +man/man3/bed_check_order.3.gz +man/man3/bed_gff_cmp.3.gz +man/man3/bed_read_feature.3.gz +man/man3/bed_set_chromosome.3.gz +man/man3/bed_set_end_pos.3.gz +man/man3/bed_set_fields.3.gz +man/man3/bed_set_name.3.gz +man/man3/bed_set_rgb_str.3.gz +man/man3/bed_set_score.3.gz +man/man3/bed_set_start_pos.3.gz +man/man3/bed_set_strand.3.gz +man/man3/bed_set_thick_end_pos.3.gz +man/man3/bed_set_thick_start_pos.3.gz +man/man3/bed_skip_header.3.gz +man/man3/bed_write_feature.3.gz +man/man3/biolibc.3.gz