Date: Sat, 16 Jun 2018 17:55:02 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r472560 - in head/biology/bedtools: . files Message-ID: <201806161755.w5GHt2mA001795@repo.freebsd.org>
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Author: jwb Date: Sat Jun 16 17:55:01 2018 New Revision: 472560 URL: https://svnweb.freebsd.org/changeset/ports/472560 Log: biology/bedtools: Fix Makefile to respect PREFIX Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D15851 Modified: head/biology/bedtools/Makefile head/biology/bedtools/files/patch-Makefile Modified: head/biology/bedtools/Makefile ============================================================================== --- head/biology/bedtools/Makefile Sat Jun 16 17:44:32 2018 (r472559) +++ head/biology/bedtools/Makefile Sat Jun 16 17:55:01 2018 (r472560) @@ -3,6 +3,7 @@ PORTNAME= bedtools DISTVERSIONPREFIX= v DISTVERSION= 2.27.1 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org Modified: head/biology/bedtools/files/patch-Makefile ============================================================================== --- head/biology/bedtools/files/patch-Makefile Sat Jun 16 17:44:32 2018 (r472559) +++ head/biology/bedtools/files/patch-Makefile Sat Jun 16 17:55:01 2018 (r472560) @@ -24,6 +24,15 @@ endif # If the user has specified to do so, tell the compile to use rand() (instead of mt19937). +@@ -33,7 +33,7 @@ endif + export LIBS = -lz + export BT_ROOT = src/utils/BamTools/ + +-prefix ?= /usr/local ++PREFIX ?= /usr/local + + SUBDIRS = $(SRC_DIR)/annotateBed \ + $(SRC_DIR)/bamToBed \ @@ -143,8 +143,8 @@ INCLUDES = -I$(SRC_DIR)/utils/bedFile \ all: print_banner $(OBJ_DIR) $(BIN_DIR) autoversion $(UTIL_SUBDIRS) $(SUBDIRS) @@ -35,6 +44,18 @@ @echo "done." @echo "- Creating executables for old CLI." +@@ -156,9 +156,9 @@ all: print_banner $(OBJ_DIR) $(BIN_DIR) + .PHONY: all + + install: all +- mkdir -p $(DESTDIR)$(prefix)/bin ++ mkdir -p $(DESTDIR)$(PREFIX)/bin + for file in bin/* ; do \ +- cp -f $$file $(DESTDIR)$(prefix)/bin; \ ++ cp -f $$file $(DESTDIR)$(PREFIX)/bin; \ + done + + print_banner: @@ -193,7 +193,7 @@ clean: .PHONY: clean
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