Date: Fri, 11 Jun 2021 15:05:37 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 874cf7c2593d - main - biology/ad2vcf: Update to 0.1.3 Message-ID: <202106111505.15BF5bK7089832@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=874cf7c2593df5d25830b1a6292d0474f8647d5d commit 874cf7c2593df5d25830b1a6292d0474f8647d5d Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-06-11 14:55:54 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-06-11 15:05:18 +0000 biology/ad2vcf: Update to 0.1.3 Updates for new biolibc API Changes: https://github.com/auerlab/ad2vcf/releases --- biology/ad2vcf/Makefile | 6 ++++-- biology/ad2vcf/distinfo | 6 +++--- biology/ad2vcf/pkg-descr | 6 ++---- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/biology/ad2vcf/Makefile b/biology/ad2vcf/Makefile index d876777451f7..591504584ab5 100644 --- a/biology/ad2vcf/Makefile +++ b/biology/ad2vcf/Makefile @@ -1,5 +1,7 @@ +# Created by: Jason Bacon <jwb@FreeBSD.org> + PORTNAME= ad2vcf -DISTVERSION= 0.1.2 +DISTVERSION= 0.1.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -8,7 +10,7 @@ COMMENT= Add allelic depth info from a SAM stream to a VCF file LICENSE= BSD2CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= biolibc>=0.1.1:biology/biolibc +LIB_DEPENDS= libbiolibc.so:biology/biolibc libxtend.so:devel/libxtend USE_GITHUB= yes GH_ACCOUNT= auerlab diff --git a/biology/ad2vcf/distinfo b/biology/ad2vcf/distinfo index 649dbb04a74c..ea97b8dc87a1 100644 --- a/biology/ad2vcf/distinfo +++ b/biology/ad2vcf/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616510305 -SHA256 (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = e85e221c69748082799f5b048412136d28a0395290b16728500fe30190eaea84 -SIZE (auerlab-ad2vcf-0.1.2_GH0.tar.gz) = 15204 +TIMESTAMP = 1623420872 +SHA256 (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 062e355c0de2d6351c099eb1004a19473140838476358cb66670de5f557043ea +SIZE (auerlab-ad2vcf-0.1.3_GH0.tar.gz) = 14484 diff --git a/biology/ad2vcf/pkg-descr b/biology/ad2vcf/pkg-descr index 21df7c875513..16def19e923e 100644 --- a/biology/ad2vcf/pkg-descr +++ b/biology/ad2vcf/pkg-descr @@ -1,6 +1,4 @@ -ad2vdf extracts allelic depth info from a SAM stream and adds it to a -corresponding single-sample VCF file. SAM input is read via stdin and the VCF -input file is taken as a command-line argument. This allows expensive BAM/CRAM -decoding to be performed in parallel by a separate samtools process. +ad2vcf extracts allelic depth info from a SAM stream and adds it to a +corresponding single-sample VCF file. WWW: https://github.com/auerlab/ad2vcf
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