Date: Thu, 24 Nov 2022 14:11:36 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 4b987075629f - main - biology/megahit: Add cmake patch to respect ports build flags Message-ID: <202211241411.2AOEBaBe037952@gitrepo.freebsd.org>
next in thread | raw e-mail | index | archive | help
The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=4b987075629fc9516f81c5f2b94afe6c5f04f9d3 commit 4b987075629fc9516f81c5f2b94afe6c5f04f9d3 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2022-11-24 14:10:13 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2022-11-24 14:10:13 +0000 biology/megahit: Add cmake patch to respect ports build flags Removes agressive optimizations hard-coded upstream --- biology/megahit/Makefile | 1 + biology/megahit/files/patch-CMakeLists.txt | 17 +++++++++++++++++ 2 files changed, 18 insertions(+) diff --git a/biology/megahit/Makefile b/biology/megahit/Makefile index 30080e9d2564..379440059baa 100644 --- a/biology/megahit/Makefile +++ b/biology/megahit/Makefile @@ -1,6 +1,7 @@ PORTNAME= megahit DISTVERSIONPREFIX= v DISTVERSION= 1.2.9 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/megahit/files/patch-CMakeLists.txt b/biology/megahit/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..d879052c7f02 --- /dev/null +++ b/biology/megahit/files/patch-CMakeLists.txt @@ -0,0 +1,17 @@ +--- CMakeLists.txt.orig 2019-10-15 02:51:03 UTC ++++ CMakeLists.txt +@@ -42,13 +42,12 @@ find_package(OpenMP REQUIRED) + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DXXH_INLINE_ALL -ftemplate-depth=3000") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wno-unused-function") +-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprefetch-loop-arrays -funroll-loops") + set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XROOT__='\"${CMAKE_SOURCE_DIR}/src\"'") + #set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -D__XFILE__='\"$(subst ${CMAKE_SOURCE_DIR}/,,$(abspath $<))\"'") + + set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${ZLIB_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}") + +-set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG") ++set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG") + set(CMAKE_CXX_FLAGS_DEBUG "-g -ggdb -O1 -D_LIBCPP_DEBUG -D_GLIBCXX_DEBUG") + + if (COVERAGE)
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202211241411.2AOEBaBe037952>