Date: Sat, 15 Jun 2019 20:37:06 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r504268 - in head/biology: . treekin Message-ID: <201906152037.x5FKb6kO042585@repo.freebsd.org>
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Author: yuri Date: Sat Jun 15 20:37:06 2019 New Revision: 504268 URL: https://svnweb.freebsd.org/changeset/ports/504268 Log: New port: biology/treekin: Efficient computation of RNA folding dynamics Added: head/biology/treekin/ head/biology/treekin/Makefile (contents, props changed) head/biology/treekin/distinfo (contents, props changed) head/biology/treekin/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sat Jun 15 19:43:22 2019 (r504267) +++ head/biology/Makefile Sat Jun 15 20:37:06 2019 (r504268) @@ -155,6 +155,7 @@ SUBDIR += tRNAscan-SE SUBDIR += t_coffee SUBDIR += tabixpp + SUBDIR += treekin SUBDIR += treepuzzle SUBDIR += trimadap SUBDIR += trimmomatic Added: head/biology/treekin/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/treekin/Makefile Sat Jun 15 20:37:06 2019 (r504268) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +PORTNAME= treekin +DISTVERSION= 0.5.1 +CATEGORIES= biology +MASTER_SITES= https://www.tbi.univie.ac.at/RNA/packages/source/ +DISTNAME= Treekin-${DISTVERSION} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Efficient computation of RNA folding dynamics + +LICENSE= LatticeLib +LICENSE_NAME= LatticeLib Disclaimer and Copyright +LICENSE_FILE= ${WRKSRC}/COPYING +LICENSE_PERMS= auto-accept dist-mirror pkg-mirror + +BUILD_DEPENDS= lapacke>0:math/lapacke + +USES= blaslapack:netlib fortran gmake localbase:ldflags + +GNU_CONFIGURE= yes + +BINARY_ALIAS= make=${GMAKE} + +PLIST_FILES= bin/${PORTNAME} \ + man/man1/${PORTNAME}.1.gz + +.include <bsd.port.mk> Added: head/biology/treekin/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/treekin/distinfo Sat Jun 15 20:37:06 2019 (r504268) @@ -0,0 +1,3 @@ +TIMESTAMP = 1560629735 +SHA256 (Treekin-0.5.1.tar.gz) = aae56c1a746829b02a9b97c6a54d1d58348718d4ca585ef41a5dbdd41d5c9f06 +SIZE (Treekin-0.5.1.tar.gz) = 222232 Added: head/biology/treekin/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/treekin/pkg-descr Sat Jun 15 20:37:06 2019 (r504268) @@ -0,0 +1,5 @@ +treekin computes folding dynamics on coarse grained version of an energy +landscape, where all conformations belonging to the same local minimum have +been contracted into a single macro-state. + +WWW: https://www.tbi.univie.ac.at/RNA/Treekin/
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