From nobody Sun Nov 27 10:12:25 2022
X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org
Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1])
by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4NKktL3NvMz4hT6X;
Sun, 27 Nov 2022 10:12:26 +0000 (UTC)
(envelope-from git@FreeBSD.org)
Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3])
(using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)
key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256
client-signature RSA-PSS (4096 bits) client-digest SHA256)
(Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK))
by mx1.freebsd.org (Postfix) with ESMTPS id 4NKktL0rkzz4KHq;
Sun, 27 Nov 2022 10:12:26 +0000 (UTC)
(envelope-from git@FreeBSD.org)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim;
t=1669543946;
h=from:from:reply-to:subject:subject:date:date:message-id:message-id:
to:to:cc:mime-version:mime-version:content-type:content-type:
content-transfer-encoding:content-transfer-encoding;
bh=ElIbILzoSgFnL5EWCHyobMmkc9UDISbH5f+mHSaAhf8=;
b=S33Wg0DG+n1CwKfhrWkQSRbaOVaVo6YaMiMaG52LTUNN4RLWl5HUZAgxhGFhw3PVIXsP3W
i+p7Sh5vtWO4qEJMNZP3ip/7epZFEdc16JbKFSr4dE8FsnWVl98k2+xLdixhQ7Idr2gRjF
nxz7KvhC8Oe1MLbA3ix+pTPKIK+JX/4C2ScvNFWs+gCkx3R3BnTHnQJY3l29KLhpLpD6Lb
uFV6LIRE7B3PRQwTY2MDnFWVGf0rR5/V7jLlDsQ7tMQKjY03ZqiilnibbF3A32RU/aQdSR
aHChkS+e3rbH2VxJVuvjVlKwodRfor/z7J7uuN+188O5X2Vf9gHV+Z7pkvf9Mg==
ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org;
s=dkim; t=1669543946;
h=from:from:reply-to:subject:subject:date:date:message-id:message-id:
to:to:cc:mime-version:mime-version:content-type:content-type:
content-transfer-encoding:content-transfer-encoding;
bh=ElIbILzoSgFnL5EWCHyobMmkc9UDISbH5f+mHSaAhf8=;
b=DJESp3hUZWhGb9jZ8eekRZ6OtiJ582YQZBmUDZzpjb6wHYj2+pFxh9YkYZ83rAlvbx++4d
k/5viLaZ2mwJpoOVneNHCEQg93KLOxK4V4gsS3Rbzj0ISDhxI3NfMev+Q8RXOxAOQsn5Uc
sWIAA6eN/sMM2700+549N5A/Z4+RYnYYNEK6Hrx+plWZKhwYpaZxpnPHyy43DxzecYDGQe
gnDdpARbzLttF2filRMpmycjEPCEXfvLT+7XKftLZ+CQcigkIHLOV/WcMON71dCbjqQK8x
SVhs2FAl5mzh97tAIHpOa4vXzOe570yPopYk5iPPMeh1GdMFYfQTt+AtjmaWmQ==
ARC-Authentication-Results: i=1;
mx1.freebsd.org;
none
ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1669543946; a=rsa-sha256; cv=none;
b=al2OhQ/1A7FW+13GSfozZrEdVME4woMF4M8rzMeZ43P5TUbOqDHbPL1jZGpqC6uvv8s0BR
DraiZzAS2CJ37Ru5c6G5Nuz9Hb5vypc6zes7DXylLrUhHIzRpAtUyn39lNYsDUkHcFgHSE
h7E0X8rUT23AZST8BfwchZWF//DgTR+R0dPyOPSmXgw/ro9uAud6kJB/J862wIi/MEhiVN
jAtgRnqFNAAJnLU5panoOCuV5tJu3idfZfUBXPw3N54EK2Ic3ljHAu4j+AGJzFBeAkWqRb
IgCuccxq40bXzB9f8mo4T2KieMFSobwZ7+e7N95q6wO1xELfL/DDfVl3IinZZg==
Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5])
(using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)
key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256)
(Client did not present a certificate)
by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4NKktK74SkzvVX;
Sun, 27 Nov 2022 10:12:25 +0000 (UTC)
(envelope-from git@FreeBSD.org)
Received: from gitrepo.freebsd.org ([127.0.1.44])
by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 2ARACPkT026996;
Sun, 27 Nov 2022 10:12:25 GMT
(envelope-from git@gitrepo.freebsd.org)
Received: (from git@localhost)
by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 2ARACP74026995;
Sun, 27 Nov 2022 10:12:25 GMT
(envelope-from git)
Date: Sun, 27 Nov 2022 10:12:25 GMT
Message-Id: <202211271012.2ARACP74026995@gitrepo.freebsd.org>
To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org,
dev-commits-ports-main@FreeBSD.org
From: Yuri Victorovich <yuri@FreeBSD.org>
Subject: git: 8feba41c4afa - main - science/py-arbor: New port: Multi-compartment neural network simulation library
List-Id: Commit messages for all branches of the ports repository <dev-commits-ports-all.freebsd.org>
List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all
List-Help: <mailto:dev-commits-ports-all+help@freebsd.org>
List-Post: <mailto:dev-commits-ports-all@freebsd.org>
List-Subscribe: <mailto:dev-commits-ports-all+subscribe@freebsd.org>
List-Unsubscribe: <mailto:dev-commits-ports-all+unsubscribe@freebsd.org>
Sender: owner-dev-commits-ports-all@freebsd.org
X-BeenThere: dev-commits-ports-all@freebsd.org
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: 8bit
X-Git-Committer: yuri
X-Git-Repository: ports
X-Git-Refname: refs/heads/main
X-Git-Reftype: branch
X-Git-Commit: 8feba41c4afa8d9ad4df7e10bb3992c79b32a03d
Auto-Submitted: auto-generated
X-ThisMailContainsUnwantedMimeParts: N
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=8feba41c4afa8d9ad4df7e10bb3992c79b32a03d
commit 8feba41c4afa8d9ad4df7e10bb3992c79b32a03d
Author: Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2022-11-27 10:11:32 +0000
Commit: Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2022-11-27 10:12:21 +0000
science/py-arbor: New port: Multi-compartment neural network simulation library
---
science/Makefile | 1 +
science/py-arbor/Makefile | 35 +++++++++++++++++++++++++++++
science/py-arbor/distinfo | 3 +++
science/py-arbor/files/patch-CMakeLists.txt | 28 +++++++++++++++++++++++
science/py-arbor/pkg-descr | 3 +++
science/py-arbor/pkg-plist | 3 +++
6 files changed, 73 insertions(+)
diff --git a/science/Makefile b/science/Makefile
index c67e3684888c..e9d5ac65faf8 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -283,6 +283,7 @@
SUBDIR += py-SimpleSpectral
SUBDIR += py-abipy
SUBDIR += py-access
+ SUBDIR += py-arbor
SUBDIR += py-asap3
SUBDIR += py-asdf
SUBDIR += py-asdf-standard
diff --git a/science/py-arbor/Makefile b/science/py-arbor/Makefile
new file mode 100644
index 000000000000..567c01f16f9c
--- /dev/null
+++ b/science/py-arbor/Makefile
@@ -0,0 +1,35 @@
+PORTNAME= arbor
+DISTVERSIONPREFIX= v
+DISTVERSION= 0.8
+CATEGORIES= science
+PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER= yuri@FreeBSD.org
+COMMENT= Multi-compartment neural network simulation library
+WWW= https://arbor-sim.org/
+
+LICENSE= BSD3CLAUSE
+LICENSE_FILE= ${WRKSRC}/../LICENSE
+
+BUILD_DEPENDS= pybind11>0:devel/pybind11
+LIB_DEPENDS= libarbor.so:science/arbor
+
+USES= cmake compiler:c++17-lang localbase:ldflags python
+
+USE_GITHUB= yes
+GH_ACCOUNT= arbor-sim
+
+WRKSRC_SUBDIR= python
+
+CMAKE_ARGS= -DPython3_EXECUTABLE=${PYTHON_CMD} \
+ -DARB_PYTHON_LIB_PATH=${PYTHONPREFIX_SITELIBDIR}
+
+CXXFLAGS+= -fPIC
+
+post-patch:
+ @${ECHO} ${DISTVERSION} > ${WRKSRC}/VERSION
+
+post-install:
+ @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/arbor/_arbor${PYTHON_EXT_SUFFIX}.so
+
+.include <bsd.port.mk>
diff --git a/science/py-arbor/distinfo b/science/py-arbor/distinfo
new file mode 100644
index 000000000000..6a64e8f1e731
--- /dev/null
+++ b/science/py-arbor/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1669535366
+SHA256 (arbor-sim-arbor-v0.8_GH0.tar.gz) = ee6b2486b1142cf4412dddd1caece0926d1712b8d1868283e3bfe73e4ec2cb71
+SIZE (arbor-sim-arbor-v0.8_GH0.tar.gz) = 7794543
diff --git a/science/py-arbor/files/patch-CMakeLists.txt b/science/py-arbor/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..9441da10091c
--- /dev/null
+++ b/science/py-arbor/files/patch-CMakeLists.txt
@@ -0,0 +1,28 @@
+--- CMakeLists.txt.orig 2022-11-15 15:19:19 UTC
++++ CMakeLists.txt
+@@ -1,3 +1,7 @@
++cmake_minimum_required(VERSION 3.19)
++
++find_package(Python3 ${arb_py_version} COMPONENTS Interpreter Development REQUIRED)
++
+ include(GNUInstallDirs)
+
+ set(PYBIND11_CPP_STANDARD -std=c++17)
+@@ -79,14 +83,14 @@ if (ARB_WITH_MPI)
+ endif()
+
+ # For unit tests on C++ side of Python wrappers
+-add_subdirectory(test)
++#add_subdirectory(test)
+
+ # Create the Python module in the build directory.
+ # The module contains the dynamic library, __init__.py and VERSION information.
+ set(python_mod_path "${CMAKE_CURRENT_BINARY_DIR}/arbor")
+ set_target_properties(pyarb PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${python_mod_path}")
+-file(COPY "${PROJECT_SOURCE_DIR}/python/__init__.py" DESTINATION "${python_mod_path}")
+-file(COPY "${PROJECT_SOURCE_DIR}/VERSION" DESTINATION "${python_mod_path}")
++file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/__init__.py" DESTINATION "${python_mod_path}")
++file(COPY "${CMAKE_CURRENT_SOURCE_DIR}/VERSION" DESTINATION "${python_mod_path}")
+
+ # Set the installation path
+
diff --git a/science/py-arbor/pkg-descr b/science/py-arbor/pkg-descr
new file mode 100644
index 000000000000..6350b89f2e28
--- /dev/null
+++ b/science/py-arbor/pkg-descr
@@ -0,0 +1,3 @@
+Arbor is a multi-compartment neuron simulation library; compatible with
+next-generation accelerators; best-practices applied to research software;
+focussed on community-driven development.
diff --git a/science/py-arbor/pkg-plist b/science/py-arbor/pkg-plist
new file mode 100644
index 000000000000..c4ff5834b200
--- /dev/null
+++ b/science/py-arbor/pkg-plist
@@ -0,0 +1,3 @@
+%%PYTHON_SITELIBDIR%%/arbor/VERSION
+%%PYTHON_SITELIBDIR%%/arbor/__init__.py
+%%PYTHON_SITELIBDIR%%/arbor/_arbor%%PYTHON_EXT_SUFFIX%%.so