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Sun, 8 Jul 2018 01:27:11 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w681RBeD099895; Sun, 8 Jul 2018 01:27:11 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201807080127.w681RBeD099895@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Sun, 8 Jul 2018 01:27:11 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474150 - in head/science: . clipper X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/science: . clipper X-SVN-Commit-Revision: 474150 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 08 Jul 2018 01:27:12 -0000 Author: yuri Date: Sun Jul 8 01:27:10 2018 New Revision: 474150 URL: https://svnweb.freebsd.org/changeset/ports/474150 Log: New port: science/clipper: Libraries for the organisation of crystallographic data Added: head/science/clipper/ head/science/clipper/Makefile (contents, props changed) head/science/clipper/distinfo (contents, props changed) head/science/clipper/pkg-descr (contents, props changed) head/science/clipper/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Sun Jul 8 00:46:45 2018 (r474149) +++ head/science/Makefile Sun Jul 8 01:27:10 2018 (r474150) @@ -44,6 +44,7 @@ SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += clhep + SUBDIR += clipper SUBDIR += colt SUBDIR += crf++ SUBDIR += dcl Added: head/science/clipper/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/clipper/Makefile Sun Jul 8 01:27:10 2018 (r474150) @@ -0,0 +1,26 @@ +# $FreeBSD$ + +PORTNAME= clipper +DISTVERSION= 2.1.20180526 +CATEGORIES= science +MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/ + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Libraries for the organisation of crystallographic data + +LICENSE= LGPL3 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libccp4c.so:science/libccp4 \ + libmmdb2.so:science/mmdb2 \ + libsfftw.so:math/fftw-float + +USES= fortran gmake libtool localbase:ldflags +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --enable-shared --disable-static \ + --enable-phs --enable-cns --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-fortran +USE_LDCONFIG= yes + +WRKSRC= ${WRKDIR}/${PORTNAME}-${DISTVERSION:C/\.[0-9]+$//} + +.include Added: head/science/clipper/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/clipper/distinfo Sun Jul 8 01:27:10 2018 (r474150) @@ -0,0 +1,3 @@ +TIMESTAMP = 1531010900 +SHA256 (clipper-2.1.20180526.tar.gz) = 7b77d5c79078eb0ce94ea503c0346c799c44a2872dfd14b09abc404025003c4b +SIZE (clipper-2.1.20180526.tar.gz) = 3007665 Added: head/science/clipper/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/clipper/pkg-descr Sun Jul 8 01:27:10 2018 (r474150) @@ -0,0 +1,8 @@ +The aim of the project is to produce a set of object-oriented libraries for the +organisation of crystallographic data and the performance of crystallographic +computation. The libraries are designed as a framework for new crystallographic +software, which will allow the full power of modern programming techniques to be +exploited by the developer. This will lead to greater functionality from simpler +code which will be easier to develop and debug. + +WWW: https://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Added: head/science/clipper/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/clipper/pkg-plist Sun Jul 8 01:27:10 2018 (r474150) @@ -0,0 +1,107 @@ +include/clipper/ccp4/ccp4_map_io.h +include/clipper/ccp4/ccp4_mtz_io.h +include/clipper/ccp4/ccp4_mtz_types.h +include/clipper/ccp4/ccp4_utils.h +include/clipper/cif/cif_data_io.h +include/clipper/clipper-ccp4.h +include/clipper/clipper-cctbx.h +include/clipper/clipper-cif.h +include/clipper/clipper-cns.h +include/clipper/clipper-contrib.h +include/clipper/clipper-minimol.h +include/clipper/clipper-mmdb.h +include/clipper/clipper-phs.h +include/clipper/clipper.h +include/clipper/cns/cns_hkl_io.h +include/clipper/cns/cns_map_io.h +include/clipper/contrib/convolution_search.h +include/clipper/contrib/edcalc.h +include/clipper/contrib/fffear.h +include/clipper/contrib/function_object_bases.h +include/clipper/contrib/mapfilter.h +include/clipper/contrib/originmatch.h +include/clipper/contrib/sfcalc.h +include/clipper/contrib/sfcalc_obs.h +include/clipper/contrib/sfscale.h +include/clipper/contrib/sfweight.h +include/clipper/contrib/skeleton.h +include/clipper/contrib/test_contrib.h +include/clipper/core/atomsf.h +include/clipper/core/cell.h +include/clipper/core/clipper_instance.h +include/clipper/core/clipper_memory.h +include/clipper/core/clipper_message.h +include/clipper/core/clipper_precision.h +include/clipper/core/clipper_stats.h +include/clipper/core/clipper_sysdep.h +include/clipper/core/clipper_test.h +include/clipper/core/clipper_thread.h +include/clipper/core/clipper_types.h +include/clipper/core/clipper_util.h +include/clipper/core/container.h +include/clipper/core/container_hkl.h +include/clipper/core/container_map.h +include/clipper/core/container_types.h +include/clipper/core/coords.h +include/clipper/core/derivs.h +include/clipper/core/fftmap.h +include/clipper/core/fftmap_sparse.h +include/clipper/core/hkl_compute.h +include/clipper/core/hkl_data.h +include/clipper/core/hkl_datatypes.h +include/clipper/core/hkl_info.h +include/clipper/core/hkl_lookup.h +include/clipper/core/hkl_operators.h +include/clipper/core/map_interp.h +include/clipper/core/map_utils.h +include/clipper/core/nxmap.h +include/clipper/core/nxmap_operator.h +include/clipper/core/ramachandran.h +include/clipper/core/resol_basisfn.h +include/clipper/core/resol_fn.h +include/clipper/core/resol_targetfn.h +include/clipper/core/rotation.h +include/clipper/core/spacegroup.h +include/clipper/core/spacegroup_data.h +include/clipper/core/symop.h +include/clipper/core/test_core.h +include/clipper/core/test_data.h +include/clipper/core/xmap.h +include/clipper/minimal-clipper-hkl.h +include/clipper/minimal-clipper-map.h +include/clipper/minimol/container_minimol.h +include/clipper/minimol/minimol.h +include/clipper/minimol/minimol_data.h +include/clipper/minimol/minimol_io.h +include/clipper/minimol/minimol_seq.h +include/clipper/minimol/minimol_utils.h +include/clipper/mmdb/clipper_mmdb.h +include/clipper/phs/phs_io.h +lib/libclipper-ccp4.so +lib/libclipper-ccp4.so.2 +lib/libclipper-ccp4.so.2.0.1 +lib/libclipper-cif.so +lib/libclipper-cif.so.2 +lib/libclipper-cif.so.2.0.1 +lib/libclipper-cns.so +lib/libclipper-cns.so.2 +lib/libclipper-cns.so.2.0.1 +lib/libclipper-contrib.so +lib/libclipper-contrib.so.2 +lib/libclipper-contrib.so.2.0.1 +lib/libclipper-core.so +lib/libclipper-core.so.2 +lib/libclipper-core.so.2.0.1 +lib/libclipper-fortran.so +lib/libclipper-fortran.so.2 +lib/libclipper-fortran.so.2.0.1 +lib/libclipper-minimol.so +lib/libclipper-minimol.so.2 +lib/libclipper-minimol.so.2.0.1 +lib/libclipper-mmdb.so +lib/libclipper-mmdb.so.2 +lib/libclipper-mmdb.so.2.0.1 +lib/libclipper-phs.so +lib/libclipper-phs.so.2 +lib/libclipper-phs.so.2.0.1 +libdata/pkgconfig/clipper.pc