Date: Mon, 2 Mar 2009 08:05:00 GMT From: Wen Heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/132249: [Maintainer Update]biology/paml:update to 4.2b Message-ID: <200903020805.n22850Q7025621@www.freebsd.org> Resent-Message-ID: <200903020810.n228A34m018604@freefall.freebsd.org>
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>Number: 132249 >Category: ports >Synopsis: [Maintainer Update]biology/paml:update to 4.2b >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Mon Mar 02 08:10:02 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD-8.0 Current >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #1: Tue Dec 16 00:26:59 HKT 2008 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: update to 4.2b from 4.2 >How-To-Repeat: >Fix: Patch attached with submission follows: --- Makefile.orig 2009-03-02 21:04:57.000000000 +0800 +++ Makefile 2009-03-02 21:12:56.000000000 +0800 @@ -6,7 +6,7 @@ # PORTNAME= paml -PORTVERSION= 4.2 +PORTVERSION= 4.2b CATEGORIES= biology MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${PORTVERSION} @@ -15,7 +15,7 @@ COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) USE_GMAKE= YES -WRKSRC= ${WRKDIR}/${DISTNAME:S/.//g}/src +WRKSRC= ${WRKDIR}/${PORTNAME}42/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" BINARIES= baseml basemlg chi2 codeml evolver pamp yn00 @@ -28,7 +28,7 @@ .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} .for f in ${DOC_FILES} - ${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/.//g}/doc/${f} ${DOCSDIR} + ${INSTALL_DATA} ${WRKDIR}/${PORTNAME}42/doc/${f} ${DOCSDIR} .endfor .endif --- distinfo.orig 2008-12-24 17:17:21.000000000 +0800 +++ distinfo 2009-03-02 21:09:28.000000000 +0800 @@ -1,3 +1,3 @@ -MD5 (paml4.2.tar.gz) = 0fda67df9ec2085e088b422af0cde888 -SHA256 (paml4.2.tar.gz) = af413a8958f9b48696af68a12dc1b50c945c04c1f85389f8fc2265e3038f5318 -SIZE (paml4.2.tar.gz) = 2872381 +MD5 (paml4.2b.tar.gz) = 9f1f5842534aeeb8101d402abaa1fee1 +SHA256 (paml4.2b.tar.gz) = fc11d44cfb31d303ec619156649dd2f264de743c64ebe21263cdffb09064904a +SIZE (paml4.2b.tar.gz) = 2637368 >Release-Note: >Audit-Trail: >Unformatted:
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