From owner-dev-commits-ports-main@freebsd.org Sat Sep 11 12:32:09 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 2584D671B16; Sat, 11 Sep 2021 12:32:09 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4H6BvX6gkyz4XfV; Sat, 11 Sep 2021 12:32:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id C53F02071E; Sat, 11 Sep 2021 12:32:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 18BCW8ua037118; Sat, 11 Sep 2021 12:32:08 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 18BCW8kT037117; Sat, 11 Sep 2021 12:32:08 GMT (envelope-from git) Date: Sat, 11 Sep 2021 12:32:08 GMT Message-Id: <202109111232.18BCW8kT037117@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 696f6acf5df4 - main - biology/jellyfish: Fix unused open mode variable MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 696f6acf5df455dddd38a7b023820f5eddcddc60 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 11 Sep 2021 12:32:09 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=696f6acf5df455dddd38a7b023820f5eddcddc60 commit 696f6acf5df455dddd38a7b023820f5eddcddc60 Author: Jason W. Bacon AuthorDate: 2021-09-11 12:29:47 +0000 Commit: Jason W. Bacon CommitDate: 2021-09-11 12:29:47 +0000 biology/jellyfish: Fix unused open mode variable PR: 258397 Reported by: dim --- biology/jellyfish/Makefile | 1 + biology/jellyfish/files/patch-include_jellyfish_dumper.hpp | 11 +++++++++++ 2 files changed, 12 insertions(+) diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile index 9937ac96c1b2..4079f92b3c4f 100644 --- a/biology/jellyfish/Makefile +++ b/biology/jellyfish/Makefile @@ -1,6 +1,7 @@ PORTNAME= Jellyfish DISTVERSIONPREFIX= v DISTVERSION= 2.3.0 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp b/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp new file mode 100644 index 000000000000..2e064ad17f08 --- /dev/null +++ b/biology/jellyfish/files/patch-include_jellyfish_dumper.hpp @@ -0,0 +1,11 @@ +--- include/jellyfish/dumper.hpp.orig 2021-09-11 12:09:13 UTC ++++ include/jellyfish/dumper.hpp +@@ -54,7 +54,7 @@ class dumper_t { (protected) + } + file_names_.push_back(name.str()); + +- out.open(name.str().c_str()); ++ out.open(name.str().c_str(), mode); + if(out.fail()) + throw ErrorWriting(err::msg() << "'" << name.str() << "': " + << "Can't open file for writing" << err::no);