From owner-svn-ports-head@freebsd.org Fri Dec 30 16:27:26 2016 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 5D905C97D24; Fri, 30 Dec 2016 16:27:26 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 2D48E1F2E; Fri, 30 Dec 2016 16:27:26 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id uBUGRPFl075922; Fri, 30 Dec 2016 16:27:25 GMT (envelope-from jrm@FreeBSD.org) Received: (from jrm@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id uBUGRPTx075920; Fri, 30 Dec 2016 16:27:25 GMT (envelope-from jrm@FreeBSD.org) Message-Id: <201612301627.uBUGRPTx075920@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jrm set sender to jrm@FreeBSD.org using -f From: Joseph Mingrone Date: Fri, 30 Dec 2016 16:27:25 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r429998 - head/biology/diamond X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 30 Dec 2016 16:27:26 -0000 Author: jrm Date: Fri Dec 30 16:27:25 2016 New Revision: 429998 URL: https://svnweb.freebsd.org/changeset/ports/429998 Log: biology/diamond: Update to version 0.8.30 Upstream changes: - slightly improved sensitivity - added option to report unaligned queries: --unal (0=no, 1=yes) - pairwise, XML and SAM format will report unaligned queries by default - added option to filter alignments by subject cover (--subject-cover) Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D9000 Modified: head/biology/diamond/Makefile head/biology/diamond/distinfo Modified: head/biology/diamond/Makefile ============================================================================== --- head/biology/diamond/Makefile Fri Dec 30 16:14:28 2016 (r429997) +++ head/biology/diamond/Makefile Fri Dec 30 16:27:25 2016 (r429998) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= diamond -PORTVERSION= 0.8.29 +PORTVERSION= 0.8.30 DISTVERSIONPREFIX=v CATEGORIES= biology Modified: head/biology/diamond/distinfo ============================================================================== --- head/biology/diamond/distinfo Fri Dec 30 16:14:28 2016 (r429997) +++ head/biology/diamond/distinfo Fri Dec 30 16:27:25 2016 (r429998) @@ -1,3 +1,3 @@ -TIMESTAMP = 1482000601 -SHA256 (bbuchfink-diamond-v0.8.29_GH0.tar.gz) = 7f50453153cee83bc38dc1a8983d8e4d6bc455515542161d5c62de11fc91d0d6 -SIZE (bbuchfink-diamond-v0.8.29_GH0.tar.gz) = 327638 +TIMESTAMP = 1483113104 +SHA256 (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = ee138e4241c2712d6ce967785474312c52a45c6b56715b00e2abf759605e1fbb +SIZE (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = 329097