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From: Wen Heping <wen@FreeBSD.org>
Date: Fri, 20 Dec 2013 15:29:07 +0000 (UTC)
To: ports-committers@freebsd.org, svn-ports-all@freebsd.org,
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Subject: svn commit: r337026 - in head/biology/clustalw: . files
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Author: wen
Date: Fri Dec 20 15:29:07 2013
New Revision: 337026
URL: http://svnweb.freebsd.org/changeset/ports/337026

Log:
  - Fix build with clang/libc++.
  - Support staging.
  
  PR:		184974
  Submitted by:	tijl@

Added:
  head/biology/clustalw/files/
  head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h   (contents, props changed)
Modified:
  head/biology/clustalw/Makefile

Modified: head/biology/clustalw/Makefile
==============================================================================
--- head/biology/clustalw/Makefile	Fri Dec 20 15:27:26 2013	(r337025)
+++ head/biology/clustalw/Makefile	Fri Dec 20 15:29:07 2013	(r337026)
@@ -10,7 +10,7 @@ MASTER_SITES=	ftp://ftp.ebi.ac.uk/pub/so
 MASTER_SITE_SUBDIR=	${PORTVERSION}
 
 MAINTAINER=	wen@FreeBSD.org
-COMMENT=	A multiple alignment program for DNA or proteins
+COMMENT=	Multiple alignment program for DNA or proteins
 
 RESTRICTED=	No commercial use.
 
@@ -20,8 +20,7 @@ GNU_CONFIGURE=	yes
 
 PLIST_FILES=	bin/clustalw bin/clustalw2
 
-NO_STAGE=	yes
 post-install:
-	${LN} -sf clustalw2 ${PREFIX}/bin/clustalw
+	${LN} -sf clustalw2 ${STAGEDIR}${PREFIX}/bin/clustalw
 
 .include <bsd.port.mk>

Added: head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/clustalw/files/patch-src-general-VectorOutOfRange.h	Fri Dec 20 15:29:07 2013	(r337026)
@@ -0,0 +1,10 @@
+--- src/general/VectorOutOfRange.h.orig	2013-12-20 23:16:13.000000000 +0800
++++ src/general/VectorOutOfRange.h	2013-12-20 23:16:37.000000000 +0800
+@@ -5,6 +5,7 @@
+  */
+ #include <stdexcept>
+ #include <exception>
++#include <string>
+ namespace clustalw
+ {
+