From nobody Wed May 29 08:49:26 2024 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Vq33C0Bmyz5M6Zr; Wed, 29 May 2024 08:49:27 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Vq33B3YZ8z4sD5; Wed, 29 May 2024 08:49:26 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1716972566; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bLteWTeCE9zJF6EVFiDc47YVKx7AmkWm6iRDjp9vOBs=; b=cXjXeSP5H1l1wZJvI0Ka51I8+tjoQYUXl+tXsOnF2VCdRiugLT5yp867+T2civhe4XOLRZ dnzXzEb/rUjMSr+Li5Axb+HEKtdiyKOi7CtyavS1RR0pITB2SxOyFjatEW0+FQzPj78mqS VShwYsUFL3TSc6YTACMZCpyjLJcN+xc7jw0bwaY7ZEGvnQRtyU1OLoWZN6Apl0EXnwieEQ YrO7U7ThHBLRtLi8bezhhu+zjd7nK5B+rTl9WbqoThL/sGVc+/94umX3GojogyjrZOi9yF qmWe+ZC4tYOQZKbVZyxEr5offeyxB3Ux+ZNpJanY8zoPyuJa9D0n7Q9g8JAmwA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1716972566; a=rsa-sha256; cv=none; b=GVgWam557Ibxi8K5QUoaGXHH1/D07I2/vqgRUuLzALSfucgRucdFQXkvTKz+u3sjtWoFCS IruzHDx+mSuM/nICs3vhr2DfEjBfz+xMAZLzMze3oRti5dKh9v/mfFEMwhdJi7dDMI8KIj +cQWgD33IuUDZAdwUf+b1PgbcCFEIW/aZoUiooyjrQY9sSGFnJyHBNx0Zc1xttZyK+v/7A rMFLQAVcdEg7c1hyUfJMFpBkRik+XsUMK791LeL2TSRe/9twfekU63dMnpyW1DZxwG4yc9 vj2Abv+QVaZz5d/TMeIBuvHsseNUF1rh5jJNOsK4tPc4GHAQVGQwGw/Vau2lMw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1716972566; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=bLteWTeCE9zJF6EVFiDc47YVKx7AmkWm6iRDjp9vOBs=; b=iKbOvp3GF9n0U9zy3AL+QveVCPBjQUn0nUIQJ3VnhC01UQvdBbHLkN7Zr3oc17ZOpRmNh6 HHmsliiBBAyCpoue4LKVeZ1BH0K44Z/aQxuc0MVQk/SvCq9Z58ZbNrVmh5Em/ZA3ZKLvhO 7ujhgsuYTT0mUhUQnG/by7ppaESsnJUFVWvbzeOd/2N0Myuj3ECDZ2CAYsAARrS/rr6kYD qx57MVXVbWWJpC1MnEXoSG+5WX5po/PuW8bKE4Q7ZiSZBDwp/T/cUPoTHmRrljugZnJZUo Zs9bvii75y45ApNt5H2eAN/BVc8m75ZV078EDZvGLB0hEND/ZxuZu7umHNkWYw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Vq33B39xqzq8M; Wed, 29 May 2024 08:49:26 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 44T8nQfZ006569; Wed, 29 May 2024 08:49:26 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 44T8nQiq006566; Wed, 29 May 2024 08:49:26 GMT (envelope-from git) Date: Wed, 29 May 2024 08:49:26 GMT Message-Id: <202405290849.44T8nQiq006566@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 72270777807c - main - science/{,py-}gemmi: update 0.6.5 =?utf-8?Q?=E2=86=92?= 0.6.6 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 72270777807c9d772ba812cbd5835a39f221f2ad Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=72270777807c9d772ba812cbd5835a39f221f2ad commit 72270777807c9d772ba812cbd5835a39f221f2ad Author: Yuri Victorovich AuthorDate: 2024-05-29 07:49:44 +0000 Commit: Yuri Victorovich CommitDate: 2024-05-29 08:49:15 +0000 science/{,py-}gemmi: update 0.6.5 → 0.6.6 Reported by: portscout --- science/gemmi/Makefile | 2 +- science/gemmi/distinfo | 6 +++--- science/gemmi/pkg-plist | 34 +++++++++++++++++++++++++++++----- science/py-gemmi/Makefile | 2 +- science/py-gemmi/distinfo | 6 +++--- science/py-gemmi/pkg-plist | 1 + 6 files changed, 38 insertions(+), 13 deletions(-) diff --git a/science/gemmi/Makefile b/science/gemmi/Makefile index 21e999fe3441..a52e1099ff3a 100644 --- a/science/gemmi/Makefile +++ b/science/gemmi/Makefile @@ -1,6 +1,6 @@ PORTNAME= gemmi DISTVERSIONPREFIX= v -DISTVERSION= 0.6.5 +DISTVERSION= 0.6.6 CATEGORIES= science # chemistry MAINTAINER= yuri@FreeBSD.org diff --git a/science/gemmi/distinfo b/science/gemmi/distinfo index 79f0c73aea79..c318b2645757 100644 --- a/science/gemmi/distinfo +++ b/science/gemmi/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1708245101 -SHA256 (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 9159506a16e0d22bbeeefc4d34137099318307db1b2bebf06fb2ae501571b19c -SIZE (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 1785842 +TIMESTAMP = 1716957697 +SHA256 (project-gemmi-gemmi-v0.6.6_GH0.tar.gz) = 722369495f7374bb938d14da2c3a9f8444b753e2d9536cf097c161a53dbbae19 +SIZE (project-gemmi-gemmi-v0.6.6_GH0.tar.gz) = 1819188 diff --git a/science/gemmi/pkg-plist b/science/gemmi/pkg-plist index 758fba0338fc..c910ac13e611 100644 --- a/science/gemmi/pkg-plist +++ b/science/gemmi/pkg-plist @@ -97,7 +97,6 @@ include/gemmi/third_party/tao/pegtl/analysis/counted.hpp include/gemmi/third_party/tao/pegtl/analysis/generic.hpp include/gemmi/third_party/tao/pegtl/analysis/grammar_info.hpp include/gemmi/third_party/tao/pegtl/analysis/insert_guard.hpp -include/gemmi/third_party/tao/pegtl/analysis/insert_rules.hpp include/gemmi/third_party/tao/pegtl/analysis/rule_info.hpp include/gemmi/third_party/tao/pegtl/analysis/rule_type.hpp include/gemmi/third_party/tao/pegtl/analyze.hpp @@ -105,8 +104,19 @@ include/gemmi/third_party/tao/pegtl/apply_mode.hpp include/gemmi/third_party/tao/pegtl/argv_input.hpp include/gemmi/third_party/tao/pegtl/ascii.hpp include/gemmi/third_party/tao/pegtl/buffer_input.hpp +include/gemmi/third_party/tao/pegtl/change_action.hpp +include/gemmi/third_party/tao/pegtl/change_action_and_state.hpp +include/gemmi/third_party/tao/pegtl/change_action_and_states.hpp +include/gemmi/third_party/tao/pegtl/change_control.hpp +include/gemmi/third_party/tao/pegtl/change_state.hpp +include/gemmi/third_party/tao/pegtl/change_states.hpp include/gemmi/third_party/tao/pegtl/config.hpp include/gemmi/third_party/tao/pegtl/cstream_input.hpp +include/gemmi/third_party/tao/pegtl/disable_action.hpp +include/gemmi/third_party/tao/pegtl/discard_input.hpp +include/gemmi/third_party/tao/pegtl/discard_input_on_failure.hpp +include/gemmi/third_party/tao/pegtl/discard_input_on_success.hpp +include/gemmi/third_party/tao/pegtl/enable_action.hpp include/gemmi/third_party/tao/pegtl/eol.hpp include/gemmi/third_party/tao/pegtl/eol_pair.hpp include/gemmi/third_party/tao/pegtl/file_input.hpp @@ -115,6 +125,7 @@ include/gemmi/third_party/tao/pegtl/internal/action.hpp include/gemmi/third_party/tao/pegtl/internal/action_input.hpp include/gemmi/third_party/tao/pegtl/internal/alnum.hpp include/gemmi/third_party/tao/pegtl/internal/alpha.hpp +include/gemmi/third_party/tao/pegtl/internal/always_false.hpp include/gemmi/third_party/tao/pegtl/internal/any.hpp include/gemmi/third_party/tao/pegtl/internal/apply.hpp include/gemmi/third_party/tao/pegtl/internal/apply0.hpp @@ -123,8 +134,8 @@ include/gemmi/third_party/tao/pegtl/internal/apply_single.hpp include/gemmi/third_party/tao/pegtl/internal/at.hpp include/gemmi/third_party/tao/pegtl/internal/bof.hpp include/gemmi/third_party/tao/pegtl/internal/bol.hpp +include/gemmi/third_party/tao/pegtl/internal/bump.hpp include/gemmi/third_party/tao/pegtl/internal/bump_help.hpp -include/gemmi/third_party/tao/pegtl/internal/bump_impl.hpp include/gemmi/third_party/tao/pegtl/internal/bytes.hpp include/gemmi/third_party/tao/pegtl/internal/control.hpp include/gemmi/third_party/tao/pegtl/internal/cr_crlf_eol.hpp @@ -147,13 +158,15 @@ include/gemmi/third_party/tao/pegtl/internal/endian_win.hpp include/gemmi/third_party/tao/pegtl/internal/eof.hpp include/gemmi/third_party/tao/pegtl/internal/eol.hpp include/gemmi/third_party/tao/pegtl/internal/eolf.hpp -include/gemmi/third_party/tao/pegtl/internal/file_mapper.hpp +include/gemmi/third_party/tao/pegtl/internal/file_mapper_posix.hpp include/gemmi/third_party/tao/pegtl/internal/file_opener.hpp include/gemmi/third_party/tao/pegtl/internal/file_reader.hpp include/gemmi/third_party/tao/pegtl/internal/has_apply.hpp include/gemmi/third_party/tao/pegtl/internal/has_apply0.hpp +include/gemmi/third_party/tao/pegtl/internal/has_match.hpp include/gemmi/third_party/tao/pegtl/internal/identifier.hpp include/gemmi/third_party/tao/pegtl/internal/if_apply.hpp +include/gemmi/third_party/tao/pegtl/internal/if_missing.hpp include/gemmi/third_party/tao/pegtl/internal/if_must.hpp include/gemmi/third_party/tao/pegtl/internal/if_must_else.hpp include/gemmi/third_party/tao/pegtl/internal/if_then_else.hpp @@ -169,7 +182,6 @@ include/gemmi/third_party/tao/pegtl/internal/list_must.hpp include/gemmi/third_party/tao/pegtl/internal/list_tail.hpp include/gemmi/third_party/tao/pegtl/internal/list_tail_pad.hpp include/gemmi/third_party/tao/pegtl/internal/marker.hpp -include/gemmi/third_party/tao/pegtl/internal/minus.hpp include/gemmi/third_party/tao/pegtl/internal/must.hpp include/gemmi/third_party/tao/pegtl/internal/not_at.hpp include/gemmi/third_party/tao/pegtl/internal/one.hpp @@ -177,6 +189,10 @@ include/gemmi/third_party/tao/pegtl/internal/opt.hpp include/gemmi/third_party/tao/pegtl/internal/pad.hpp include/gemmi/third_party/tao/pegtl/internal/pad_opt.hpp include/gemmi/third_party/tao/pegtl/internal/peek_char.hpp +include/gemmi/third_party/tao/pegtl/internal/peek_mask_uint.hpp +include/gemmi/third_party/tao/pegtl/internal/peek_mask_uint8.hpp +include/gemmi/third_party/tao/pegtl/internal/peek_uint.hpp +include/gemmi/third_party/tao/pegtl/internal/peek_uint8.hpp include/gemmi/third_party/tao/pegtl/internal/peek_utf16.hpp include/gemmi/third_party/tao/pegtl/internal/peek_utf32.hpp include/gemmi/third_party/tao/pegtl/internal/peek_utf8.hpp @@ -185,13 +201,14 @@ include/gemmi/third_party/tao/pegtl/internal/plus.hpp include/gemmi/third_party/tao/pegtl/internal/raise.hpp include/gemmi/third_party/tao/pegtl/internal/range.hpp include/gemmi/third_party/tao/pegtl/internal/ranges.hpp +include/gemmi/third_party/tao/pegtl/internal/read_uint.hpp +include/gemmi/third_party/tao/pegtl/internal/rematch.hpp include/gemmi/third_party/tao/pegtl/internal/rep.hpp include/gemmi/third_party/tao/pegtl/internal/rep_min.hpp include/gemmi/third_party/tao/pegtl/internal/rep_min_max.hpp include/gemmi/third_party/tao/pegtl/internal/rep_opt.hpp include/gemmi/third_party/tao/pegtl/internal/require.hpp include/gemmi/third_party/tao/pegtl/internal/result_on_found.hpp -include/gemmi/third_party/tao/pegtl/internal/rule_conjunction.hpp include/gemmi/third_party/tao/pegtl/internal/rules.hpp include/gemmi/third_party/tao/pegtl/internal/seq.hpp include/gemmi/third_party/tao/pegtl/internal/skip_control.hpp @@ -204,6 +221,7 @@ include/gemmi/third_party/tao/pegtl/internal/trivial.hpp include/gemmi/third_party/tao/pegtl/internal/try_catch_type.hpp include/gemmi/third_party/tao/pegtl/internal/until.hpp include/gemmi/third_party/tao/pegtl/istream_input.hpp +include/gemmi/third_party/tao/pegtl/match.hpp include/gemmi/third_party/tao/pegtl/memory_input.hpp include/gemmi/third_party/tao/pegtl/mmap_input.hpp include/gemmi/third_party/tao/pegtl/normal.hpp @@ -212,10 +230,16 @@ include/gemmi/third_party/tao/pegtl/parse.hpp include/gemmi/third_party/tao/pegtl/parse_error.hpp include/gemmi/third_party/tao/pegtl/position.hpp include/gemmi/third_party/tao/pegtl/read_input.hpp +include/gemmi/third_party/tao/pegtl/require_apply.hpp +include/gemmi/third_party/tao/pegtl/require_apply0.hpp include/gemmi/third_party/tao/pegtl/rewind_mode.hpp include/gemmi/third_party/tao/pegtl/rules.hpp include/gemmi/third_party/tao/pegtl/string_input.hpp include/gemmi/third_party/tao/pegtl/tracking_mode.hpp +include/gemmi/third_party/tao/pegtl/uint16.hpp +include/gemmi/third_party/tao/pegtl/uint32.hpp +include/gemmi/third_party/tao/pegtl/uint64.hpp +include/gemmi/third_party/tao/pegtl/uint8.hpp include/gemmi/third_party/tao/pegtl/utf16.hpp include/gemmi/third_party/tao/pegtl/utf32.hpp include/gemmi/third_party/tao/pegtl/utf8.hpp diff --git a/science/py-gemmi/Makefile b/science/py-gemmi/Makefile index 0a157ec2f5ed..89b60d4aa7b1 100644 --- a/science/py-gemmi/Makefile +++ b/science/py-gemmi/Makefile @@ -1,6 +1,6 @@ PORTNAME= gemmi DISTVERSIONPREFIX= v -DISTVERSION= 0.6.5 +DISTVERSION= 0.6.6 CATEGORIES= science python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/science/py-gemmi/distinfo b/science/py-gemmi/distinfo index 7d7f29781493..0b7ff31c6841 100644 --- a/science/py-gemmi/distinfo +++ b/science/py-gemmi/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1708246407 -SHA256 (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 9159506a16e0d22bbeeefc4d34137099318307db1b2bebf06fb2ae501571b19c -SIZE (project-gemmi-gemmi-v0.6.5_GH0.tar.gz) = 1785842 +TIMESTAMP = 1716960965 +SHA256 (project-gemmi-gemmi-v0.6.6_GH0.tar.gz) = 722369495f7374bb938d14da2c3a9f8444b753e2d9536cf097c161a53dbbae19 +SIZE (project-gemmi-gemmi-v0.6.6_GH0.tar.gz) = 1819188 diff --git a/science/py-gemmi/pkg-plist b/science/py-gemmi/pkg-plist index 9a35f7adf261..7583c7ed2cdc 100644 --- a/science/py-gemmi/pkg-plist +++ b/science/py-gemmi/pkg-plist @@ -22,4 +22,5 @@ %%PYTHON_SITELIBDIR%%/gemmi/examples/refln-stats.py %%PYTHON_SITELIBDIR%%/gemmi/examples/simple_search.py %%PYTHON_SITELIBDIR%%/gemmi/examples/sub_ccd.py +%%PYTHON_SITELIBDIR%%/gemmi/examples/to_rdkit.py %%PYTHON_SITELIBDIR%%/gemmi/examples/weight.py