Date: Thu, 15 Dec 2005 13:40:46 -0800 From: "Michael C. Shultz" <ringworm01@gmail.com> To: freebsd-ports@freebsd.org Cc: FreeBSD Ports <ports@freebsd.org>, Hiram Clawson <hiram@soe.ucsc.edu>, Melvyn Sopacua <freebsd.ports@melvyn.homeunix.org>, Jim Kent <jim_kent@pacbell.net> Subject: Re: need help from a C programmer Message-ID: <200512151340.47502.ringworm01@gmail.com> In-Reply-To: <20051215210308.GK49639@iib.unsam.edu.ar> References: <20051215191038.GH49639@iib.unsam.edu.ar> <200512152115.28786.freebsd.ports@melvyn.homeunix.org> <20051215210308.GK49639@iib.unsam.edu.ar>
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On Thursday 15 December 2005 13:03, Fernan Aguero wrote: > +----[ Melvyn Sopacua <freebsd.ports@melvyn.homeunix.org> (15.Dec.2005 17:20): > | On Thursday 15 December 2005 20:10, Fernan Aguero wrote: > | > My draft port is here > | > http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.shar.gz > | > | Not getting past: > | gmake[1]: Leaving directory > | `/usr/ports/biology/blat/work/blatSrc/jkOwnLib' cd blat && gmake > | gmake[1]: Entering directory `/usr/ports/biology/blat/work/blatSrc/blat' > | cc -O -O2 -fno-strict-aliasing -pipe -D_FILE_OFFSET_BITS=64 > | -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_ -I../inc -I../../inc > | -I../../../inc -I../../../../inc -c blat.c > | gmake[1]: *** No rule to make target `../lib//jkweb.a', needed by `blat'. > | Stop. > | gmake[1]: Leaving directory `/usr/ports/biology/blat/work/blatSrc/blat' > | > | Fix for the Makefile: > | --- /tmp/blat/Makefile Thu Dec 15 21:00:05 2005 > | +++ Makefile Thu Dec 15 20:59:01 2005 > | @@ -20,6 +20,9 @@ > | USE_GCC= 3.4+ > | MAKEFILE= makefile > | WRKSRC= ${WRKDIR}/${PORTNAME}Src > | +_MACHTYPE!= uname -m > | +MACHTYPE?= ${_MACHTYPE} > | +MAKE_ENV+= MACHTYPE=${MACHTYPE} > | > | post-patch: > | @${MKDIR} ${WRKSRC}/bin/${MACHTYPE} > > Mmm ... it worked fine for me in FreeBSD-4.11 > > Anyway, it works also with your patch ;) > > | As for the error, there's some redefining going on in common.h, and > | probably screwing up some macros in the end. > | # cat files/patch-hg-pslPretty-pslPretty.c > | --- hg/pslPretty/pslPretty.c.orig Fri Mar 26 02:03:59 2004 > | +++ hg/pslPretty/pslPretty.c Thu Dec 15 21:09:52 2005 > | @@ -686,7 +686,7 @@ > | if (--dotMod <= 0) > | { > | printf("."); > | - fflush(stdout); > | + fflush(uglyOut); > | dotMod = dot; > | } > | } > > +----] > > I've tried this patch but it didn't fix the problem. > > Are you suggesting that other references to 'stdout' should > be replaced by 'uglyOut'? > > Fernan > > PS: I forgot to CC Jim (BLAT's author) and Hiram (UCSC > staff) in my past postings. I add them now so they're in the > loop Change every occurance of #include "common.h" to #include <common.h> to fix the stdout errors in your c sources. Then when you start getting errors like this: /usr/bin/ld: cannot open output file /root/bin/i386/pslReps: No such file or directory In your makefiles change $(HOME) to ../.. -Mike
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