From owner-svn-ports-head@freebsd.org Sat Jul 7 23:32:59 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 20B3C103A8C2; Sat, 7 Jul 2018 23:32:59 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id BE9BA71FE2; Sat, 7 Jul 2018 23:32:58 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 9FAF81E1CC; Sat, 7 Jul 2018 23:32:58 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w67NWwNs043206; Sat, 7 Jul 2018 23:32:58 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w67NWv7a043202; Sat, 7 Jul 2018 23:32:57 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201807072332.w67NWv7a043202@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Sat, 7 Jul 2018 23:32:57 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474143 - in head/science: . mmdb2 X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/science: . mmdb2 X-SVN-Commit-Revision: 474143 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 07 Jul 2018 23:32:59 -0000 Author: yuri Date: Sat Jul 7 23:32:57 2018 New Revision: 474143 URL: https://svnweb.freebsd.org/changeset/ports/474143 Log: New port: science/mmdb2: C++ toolkit for working with macromolecular coordinate files Added: head/science/mmdb2/ head/science/mmdb2/Makefile (contents, props changed) head/science/mmdb2/distinfo (contents, props changed) head/science/mmdb2/pkg-descr (contents, props changed) head/science/mmdb2/pkg-plist (contents, props changed) Modified: head/science/Makefile Modified: head/science/Makefile ============================================================================== --- head/science/Makefile Sat Jul 7 22:41:39 2018 (r474142) +++ head/science/Makefile Sat Jul 7 23:32:57 2018 (r474143) @@ -115,6 +115,7 @@ SUBDIR += metaf2xml SUBDIR += metaphysicl SUBDIR += minc2 + SUBDIR += mmdb2 SUBDIR += mol2ps SUBDIR += mpb SUBDIR += mpqc Added: head/science/mmdb2/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/Makefile Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,21 @@ +# $FreeBSD$ + +PORTNAME= mmdb2 +DISTVERSION= 2.0.12 +CATEGORIES= science +MASTER_SITES= https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/ + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C++ toolkit for working with macromolecular coordinate files + +LICENSE= GPLv3 LGPL3 +LICENSE_COMB= dual +LICENSE_FILE_GPLv3= ${WRKSRC}/COPYING +LICENSE_FILE_LGPL3= ${WRKSRC}/COPYING.LESSER + +USES= gmake libtool +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --enable-shared --disable-static +USE_LDCONFIG= yes + +.include Added: head/science/mmdb2/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/distinfo Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,3 @@ +TIMESTAMP = 1531005594 +SHA256 (mmdb2-2.0.12.tar.gz) = a24fca06266c6b4db06ad1e0e0ddf5037f2ea624347ab119a6b163d8929c62a0 +SIZE (mmdb2-2.0.12.tar.gz) = 723975 Added: head/science/mmdb2/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/pkg-descr Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,15 @@ +MMDB is designed to assist developers in working with macromolecular coordinate +files. The library handles both PDB and mmCIF format files. + +The Library also features an internal binary format, portable between different +platforms. This is achieved at uniformity of the Library's interface functions, +so that there is no difference in handling different formats. + +MMDB provides various high-level tools for working with coordinate files, +including reading and writing, orthogonal-fractional transforms, generation of +symmetry mates, editing the molecular structure and more. + +MMDB is written by Eugene Krissinel, and is distributed as a part of the CCP4 +suite. This project maintains a current stand-alone version of the library. + +WWW: https://launchpad.net/mmd Added: head/science/mmdb2/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/mmdb2/pkg-plist Sat Jul 7 23:32:57 2018 (r474143) @@ -0,0 +1,38 @@ +include/mmdb2/hybrid_36.h +include/mmdb2/mmdb_atom.h +include/mmdb2/mmdb_bondmngr.h +include/mmdb2/mmdb_chain.h +include/mmdb2/mmdb_cifdefs.h +include/mmdb2/mmdb_coormngr.h +include/mmdb2/mmdb_cryst.h +include/mmdb2/mmdb_defs.h +include/mmdb2/mmdb_ficif.h +include/mmdb2/mmdb_io_file.h +include/mmdb2/mmdb_io_stream.h +include/mmdb2/mmdb_machine_.h +include/mmdb2/mmdb_manager.h +include/mmdb2/mmdb_mask.h +include/mmdb2/mmdb_math_.h +include/mmdb2/mmdb_math_align.h +include/mmdb2/mmdb_math_bfgsmin.h +include/mmdb2/mmdb_math_fft.h +include/mmdb2/mmdb_math_graph.h +include/mmdb2/mmdb_math_linalg.h +include/mmdb2/mmdb_math_rand.h +include/mmdb2/mmdb_mattype.h +include/mmdb2/mmdb_mmcif_.h +include/mmdb2/mmdb_model.h +include/mmdb2/mmdb_root.h +include/mmdb2/mmdb_rwbrook.h +include/mmdb2/mmdb_selmngr.h +include/mmdb2/mmdb_seqsuperpose.h +include/mmdb2/mmdb_symop.h +include/mmdb2/mmdb_tables.h +include/mmdb2/mmdb_title.h +include/mmdb2/mmdb_uddata.h +include/mmdb2/mmdb_utils.h +include/mmdb2/mmdb_xml_.h +lib/libmmdb2.so +lib/libmmdb2.so.0 +lib/libmmdb2.so.0.0.0 +libdata/pkgconfig/mmdb2.pc