From owner-freebsd-ports-bugs@FreeBSD.ORG Sun May 17 10:50:02 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 09528106564A for ; Sun, 17 May 2009 10:50:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id D92B78FC1B for ; Sun, 17 May 2009 10:50:01 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n4HAo1ZK061392 for ; Sun, 17 May 2009 10:50:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n4HAo186061391; Sun, 17 May 2009 10:50:01 GMT (envelope-from gnats) Resent-Date: Sun, 17 May 2009 10:50:01 GMT Resent-Message-Id: <200905171050.n4HAo186061391@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen Heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 0E2E6106566C for ; Sun, 17 May 2009 10:42:37 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id E7B4B8FC0A for ; Sun, 17 May 2009 10:42:36 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id n4HAgass079617 for ; Sun, 17 May 2009 10:42:36 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id n4HAgaAX079616; Sun, 17 May 2009 10:42:36 GMT (envelope-from nobody) Message-Id: <200905171042.n4HAgaAX079616@www.freebsd.org> Date: Sun, 17 May 2009 10:42:36 GMT From: Wen Heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/134609: [NEW PORT]science/p5-Chemistry-MacroMol:Perl toolkit to describe macromolecules X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 17 May 2009 10:50:02 -0000 >Number: 134609 >Category: ports >Synopsis: [NEW PORT]science/p5-Chemistry-MacroMol:Perl toolkit to describe macromolecules >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun May 17 10:50:01 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-CURRENT >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: Chemistry-MacroMol is a toolkit includes basic objects and methods to describe macromolecules, a macromolecule is just a molecule that consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains. WWW: http://search.cpan.org/dist/Chemistry-MacroMol/ >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # p5-Chemistry-MacroMol # p5-Chemistry-MacroMol/Makefile # p5-Chemistry-MacroMol/distinfo # p5-Chemistry-MacroMol/pkg-descr # p5-Chemistry-MacroMol/pkg-plist # echo c - p5-Chemistry-MacroMol mkdir -p p5-Chemistry-MacroMol > /dev/null 2>&1 echo x - p5-Chemistry-MacroMol/Makefile sed 's/^X//' >p5-Chemistry-MacroMol/Makefile << '9301a0307ce01ad88a474382ed1063bb' X# New ports collection makefile for: Chemistry-MacroMol X# Date created: 17 May, 2009 X# Whom: Wen Heping X# X# $FreeBSD$ X# X XPORTNAME= Chemistry-MacroMol XPORTVERSION= 0.06 XCATEGORIES= science perl5 XMASTER_SITES= CPAN XPKGNAMEPREFIX= p5- X XMAINTAINER= wenheping@gmail.com XCOMMENT= Perl toolkit to describe macromolecules X XBUILD_DEPENDS= p5-Chemistry-Mol>=0.37:${PORTSDIR}/science/p5-Chemistry-Mol XRUN_DEPENDS= ${BUILD_DEPENDS} X XPERL_CONFIGURE= yes X XMAN3= Chemistry::MacroMol.3 Chemistry::Domain.3 X X.include 9301a0307ce01ad88a474382ed1063bb echo x - p5-Chemistry-MacroMol/distinfo sed 's/^X//' >p5-Chemistry-MacroMol/distinfo << '823c93d98867a26ad5332f4817c0a3b8' XMD5 (Chemistry-MacroMol-0.06.tar.gz) = 2aa357a957f36e247535ec396744fd93 XSHA256 (Chemistry-MacroMol-0.06.tar.gz) = 37c33b1a72a80905983ff1f9b373e40b7f1ea5441c2108e9f7d16d772f9e3079 XSIZE (Chemistry-MacroMol-0.06.tar.gz) = 2953 823c93d98867a26ad5332f4817c0a3b8 echo x - p5-Chemistry-MacroMol/pkg-descr sed 's/^X//' >p5-Chemistry-MacroMol/pkg-descr << 'a1ddee2175bc4005f72b35dc543f1f11' XChemistry-MacroMol is a toolkit includes basic objects and methods to Xdescribe macromolecules, a macromolecule is just a molecule that Xconsists of several "domains". For example, a protein consists Xof aminoacid residues, or a nucleic acid consists of bases. Therefore XChemistry::MacroMol is derived from Chemistry::Mol, with additional Xmethods to handle the domains. X XWWW: http://search.cpan.org/dist/Chemistry-MacroMol/ a1ddee2175bc4005f72b35dc543f1f11 echo x - p5-Chemistry-MacroMol/pkg-plist sed 's/^X//' >p5-Chemistry-MacroMol/pkg-plist << '87c8ff321b5a0076922f76654daaa0ca' X%%SITE_PERL%%/Chemistry/Domain.pm X%%SITE_PERL%%/Chemistry/MacroMol.pm X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/MacroMol/.packlist X@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry/MacroMol X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Chemistry X@dirrmtry %%SITE_PERL%%/Chemistry 87c8ff321b5a0076922f76654daaa0ca exit >Release-Note: >Audit-Trail: >Unformatted: