From nobody Tue May 28 21:26:07 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Vpltm1Mbwz5LCGN; Tue, 28 May 2024 21:26:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Vpltm0jl3z4sgn; Tue, 28 May 2024 21:26:08 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1716931568; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Y6iz9V70kUjgaoRWzvwg7XuKgwlC/KwlqhraCHKLX+4=; b=M7/DseWX71tJG3hzkAKe7UwXAU4kdKgAJhfxryAEPbXIQAXEO9MDCiDyD8EJ4VTyqxIdAR ce8G1u1w+kAXkXxKJCikKnqcXpn811Qm1+qEE1A/fO0PqljOVbg0Z1Do8Q5soy+9M7jygt vsYfqI/8GvoGcFVHL9hhMXhLLAJSF2gluBy5LMpBXbpU7Ypi2AaYEDh+7qdKAKuVDT+XGZ l4koYdAGs9LgzvzTf4IzSMepuXicNj5gKxN+BQyGFOptvYFAxVRwVv2DvSKvkcAA5X7ImQ DaLS+/GBdV0CwkNLXHtJs5WAhVwxg4Jxxro7w84MglNcDC2/enshvcT9ad/+DQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1716931568; a=rsa-sha256; cv=none; b=lXxh3z+TpBaqw4G/Kqu3JpMfFA7nYz7ML1Jbk4l+x3vfd2CZa2d2I2rs97J4ZyeoYL5OCG tVqMXfMv8hXNGn7jCciu/JwE+6Me8W32mDzT4w2BD1fZlnGTM0VKUuCekJ9MMZ7cIfR9lU lTgk5i4L7nM7oN+F0LBq17+HG5Gv+05XLXx+8K6evBhNFRFwwbUIQadVg6xqy3c6GmuDuL NuQRZk6IuzgrZ28AFDlTk6BSElzxpYQRW5YSzCmn5o3NYWE8ZxEfULIFoU3OcNcrgfdJnV T2oMplptFqG7WukZfMXNcdx+SyoWIp8JXG7js8OWYhl3iOC7P8YDbmkS/AO0+g== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1716931568; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Y6iz9V70kUjgaoRWzvwg7XuKgwlC/KwlqhraCHKLX+4=; b=rnbr3OZb5fGkHCPy6nleA5Ats/PTH5mmBqdBFSUMFUqCZBRfLzSCGW7EHgpZ3Q7phaYtQ4 9ZzWosCn4t87NxgGUpoPRudL97dLNBqxK63y1d/g7bNBXlvdVmIWWTeCNi4+vZgoox/n0v TYAfRxnox9perhlFEpzyWQlfyAw42vnMqTYedf3veE6HhQgRzMTWi9W6t3J7XceWFwALhn rxfBzpFqEdvjZiU0REfGz4tgwrXTOf6nuepZRI7LPszru6ZTBccWLEPD1GjpZh7K5bjxgp HDJnemlGcJZ2xSbFpXuPstpgLQ8x/xg04WytdgIINN8WVWuYtNrO/qdnGrcaEw== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Vpltm0K1DzSNT; Tue, 28 May 2024 21:26:08 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 44SLQ7Ep056680; Tue, 28 May 2024 21:26:07 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 44SLQ7sl056677; Tue, 28 May 2024 21:26:07 GMT (envelope-from git) Date: Tue, 28 May 2024 21:26:07 GMT Message-Id: <202405282126.44SLQ7sl056677@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 3bf602d2a7d0 - main - biology/gcta: Unbreak build on 14.x aarch64 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 3bf602d2a7d0bc83686fe197fa71ae7d089b63d0 Auto-Submitted: auto-generated The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=3bf602d2a7d0bc83686fe197fa71ae7d089b63d0 commit 3bf602d2a7d0bc83686fe197fa71ae7d089b63d0 Author: Jason W. Bacon AuthorDate: 2024-05-28 21:25:08 +0000 Commit: Jason W. Bacon CommitDate: 2024-05-28 21:26:06 +0000 biology/gcta: Unbreak build on 14.x aarch64 Missing #include in a few files Reported by: pkg-fallout --- biology/gcta/distinfo | 6 +++--- biology/gcta/files/patch-include_Covar.h | 10 ++++++++++ biology/gcta/files/patch-include_Marker.h | 10 ++++++++++ biology/gcta/files/patch-include_Pheno.h | 10 ++++++++++ 4 files changed, 33 insertions(+), 3 deletions(-) diff --git a/biology/gcta/distinfo b/biology/gcta/distinfo index 9bda3ffe28e6..6c40e3717a8f 100644 --- a/biology/gcta/distinfo +++ b/biology/gcta/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1697202096 -SHA256 (jianyangqt-gcta-v1.94.1_GH0.tar.gz) = d38841587bef016d7885cc1b3287d7ed0373bd370674130e814e2c5e6a90bfbf -SIZE (jianyangqt-gcta-v1.94.1_GH0.tar.gz) = 1101577 +TIMESTAMP = 1716931486 +SHA256 (jianyangqt-gcta-v1.94.1_GH0.tar.gz) = 88400bf4ead6598587dfc7b99159cf008e616c7433512adbc8a0fdeab1f747ce +SIZE (jianyangqt-gcta-v1.94.1_GH0.tar.gz) = 49152 SHA256 (zhilizheng-plink-ng-3744540_GH0.tar.gz) = dfa4879bc6bcbe24411451748c7c5dc803e42cafa55b008134f0d123cd933222 SIZE (zhilizheng-plink-ng-3744540_GH0.tar.gz) = 3222588 diff --git a/biology/gcta/files/patch-include_Covar.h b/biology/gcta/files/patch-include_Covar.h new file mode 100644 index 000000000000..e68900ecefd9 --- /dev/null +++ b/biology/gcta/files/patch-include_Covar.h @@ -0,0 +1,10 @@ +--- include/Covar.h.orig 2024-05-27 23:23:59 UTC ++++ include/Covar.h +@@ -19,6 +19,7 @@ + #define gcta2_covar_h + #include + #include ++#include + #include + #include "Pheno.h" + diff --git a/biology/gcta/files/patch-include_Marker.h b/biology/gcta/files/patch-include_Marker.h new file mode 100644 index 000000000000..21f74d3e34c1 --- /dev/null +++ b/biology/gcta/files/patch-include_Marker.h @@ -0,0 +1,10 @@ +--- include/Marker.h.orig 2024-05-28 12:14:10 UTC ++++ include/Marker.h +@@ -20,6 +20,7 @@ + #include + #include + #include ++#include + using std::vector; + using std::string; + using std::to_string; diff --git a/biology/gcta/files/patch-include_Pheno.h b/biology/gcta/files/patch-include_Pheno.h new file mode 100644 index 000000000000..369993603d7b --- /dev/null +++ b/biology/gcta/files/patch-include_Pheno.h @@ -0,0 +1,10 @@ +--- include/Pheno.h.orig 2024-05-28 12:15:54 UTC ++++ include/Pheno.h +@@ -19,6 +19,7 @@ + #include + #include + #include ++#include + using std::map; + using std::vector; + using std::string;