From owner-svn-ports-head@freebsd.org Sun Aug 11 16:49:25 2019 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 3098BBCF69; Sun, 11 Aug 2019 16:49:25 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4664h50RX5z47SB; Sun, 11 Aug 2019 16:49:25 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id E4F6A19212; Sun, 11 Aug 2019 16:49:24 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x7BGnONk021985; Sun, 11 Aug 2019 16:49:24 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x7BGnOmF021982; Sun, 11 Aug 2019 16:49:24 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <201908111649.x7BGnOmF021982@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Sun, 11 Aug 2019 16:49:24 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r508637 - head/biology/p5-BioPerl X-SVN-Group: ports-head X-SVN-Commit-Author: sunpoet X-SVN-Commit-Paths: head/biology/p5-BioPerl X-SVN-Commit-Revision: 508637 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 11 Aug 2019 16:49:25 -0000 Author: sunpoet Date: Sun Aug 11 16:49:24 2019 New Revision: 508637 URL: https://svnweb.freebsd.org/changeset/ports/508637 Log: Update to 1.007005 (1.7.5) - Fix DISTNAME - Bump PORTREVISION for package change Changes: https://metacpan.org/changes/distribution/BioPerl Modified: head/biology/p5-BioPerl/Makefile head/biology/p5-BioPerl/distinfo head/biology/p5-BioPerl/pkg-plist Modified: head/biology/p5-BioPerl/Makefile ============================================================================== --- head/biology/p5-BioPerl/Makefile Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/Makefile Sun Aug 11 16:49:24 2019 (r508637) @@ -3,11 +3,12 @@ PORTNAME= BioPerl PORTVERSION= 1.007005 +PORTREVISION= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CDRAUG PKGNAMEPREFIX= p5- -DISTNAME= ${PORTNAME}-1.7.4 +DISTNAME= ${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} MAINTAINER= sunpoet@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics Modified: head/biology/p5-BioPerl/distinfo ============================================================================== --- head/biology/p5-BioPerl/distinfo Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/distinfo Sun Aug 11 16:49:24 2019 (r508637) @@ -1,3 +1,3 @@ -TIMESTAMP = 1550843244 -SHA256 (BioPerl-1.7.4.tar.gz) = 5a074947bba299cdb47cbf1c66689502db02c022fc138459e3393da45d7c707b -SIZE (BioPerl-1.7.4.tar.gz) = 7642013 +TIMESTAMP = 1565523237 +SHA256 (BioPerl-1.7.5.tar.gz) = 4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a +SIZE (BioPerl-1.7.5.tar.gz) = 7512326 Modified: head/biology/p5-BioPerl/pkg-plist ============================================================================== --- head/biology/p5-BioPerl/pkg-plist Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/pkg-plist Sun Aug 11 16:49:24 2019 (r508637) @@ -329,7 +329,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/Seq/SeqBuilder.pm %%SITE_PERL%%/Bio/Seq/SeqFactory.pm %%SITE_PERL%%/Bio/Seq/SeqFastaSpeedFactory.pm -%%SITE_PERL%%/Bio/Seq/SeqWithQuality.pm %%SITE_PERL%%/Bio/Seq/SequenceTrace.pm %%SITE_PERL%%/Bio/Seq/SimulatedRead.pm %%SITE_PERL%%/Bio/Seq/TraceI.pm @@ -412,13 +411,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/SimpleAlign.pm %%SITE_PERL%%/Bio/SimpleAnalysisI.pm %%SITE_PERL%%/Bio/Species.pm -%%SITE_PERL%%/Bio/Symbol/Alphabet.pm -%%SITE_PERL%%/Bio/Symbol/AlphabetI.pm -%%SITE_PERL%%/Bio/Symbol/DNAAlphabet.pm -%%SITE_PERL%%/Bio/Symbol/ProteinAlphabet.pm -%%SITE_PERL%%/Bio/Symbol/README.Symbol -%%SITE_PERL%%/Bio/Symbol/Symbol.pm -%%SITE_PERL%%/Bio/Symbol/SymbolI.pm %%SITE_PERL%%/Bio/Taxon.pm %%SITE_PERL%%/Bio/Tools/Alignment/Consed.pm %%SITE_PERL%%/Bio/Tools/Alignment/Trim.pm @@ -474,7 +466,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/Tools/Run/GenericParameters.pm %%SITE_PERL%%/Bio/Tools/Run/ParametersI.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/PhyloBase.pm -%%SITE_PERL%%/Bio/Tools/Run/README %%SITE_PERL%%/Bio/Tools/Run/WrapperBase.pm %%SITE_PERL%%/Bio/Tools/Run/WrapperBase/CommandExts.pm %%SITE_PERL%%/Bio/Tools/Seg.pm @@ -852,7 +843,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::Seq::SeqBuilder.3.gz %%PERL5_MAN3%%/Bio::Seq::SeqFactory.3.gz %%PERL5_MAN3%%/Bio::Seq::SeqFastaSpeedFactory.3.gz -%%PERL5_MAN3%%/Bio::Seq::SeqWithQuality.3.gz %%PERL5_MAN3%%/Bio::Seq::SequenceTrace.3.gz %%PERL5_MAN3%%/Bio::Seq::SimulatedRead.3.gz %%PERL5_MAN3%%/Bio::Seq::TraceI.3.gz @@ -935,12 +925,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::SimpleAlign.3.gz %%PERL5_MAN3%%/Bio::SimpleAnalysisI.3.gz %%PERL5_MAN3%%/Bio::Species.3.gz -%%PERL5_MAN3%%/Bio::Symbol::Alphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::AlphabetI.3.gz -%%PERL5_MAN3%%/Bio::Symbol::DNAAlphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::ProteinAlphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::Symbol.3.gz -%%PERL5_MAN3%%/Bio::Symbol::SymbolI.3.gz %%PERL5_MAN3%%/Bio::Taxon.3.gz %%PERL5_MAN3%%/Bio::Tools::Alignment::Consed.3.gz %%PERL5_MAN3%%/Bio::Tools::Alignment::Trim.3.gz