From owner-svn-ports-all@freebsd.org Thu Oct 3 08:52:09 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id D7FE212E59D; Thu, 3 Oct 2019 08:52:09 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46kRZx4KsVz3Kx2; Thu, 3 Oct 2019 08:52:09 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 589DA99F5; Thu, 3 Oct 2019 08:52:09 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x938q9T5041850; Thu, 3 Oct 2019 08:52:09 GMT (envelope-from pi@FreeBSD.org) Received: (from pi@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x938q8Jj041844; Thu, 3 Oct 2019 08:52:08 GMT (envelope-from pi@FreeBSD.org) Message-Id: <201910030852.x938q8Jj041844@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: pi set sender to pi@FreeBSD.org using -f From: Kurt Jaeger Date: Thu, 3 Oct 2019 08:52:08 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r513654 - in head/math: . mcsim X-SVN-Group: ports-head X-SVN-Commit-Author: pi X-SVN-Commit-Paths: in head/math: . mcsim X-SVN-Commit-Revision: 513654 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 03 Oct 2019 08:52:09 -0000 Author: pi Date: Thu Oct 3 08:52:08 2019 New Revision: 513654 URL: https://svnweb.freebsd.org/changeset/ports/513654 Log: New port: math/mcsim GNU MCSim is a simulation package, written in C, which allows you to: * design and run your own statistical or simulation models * perform Monte Carlo stochastic simulations * do Bayesian inference through Markov Chain Monte Carlo simulations * formally optimize experimental designs WWW: https://www.gnu.org/software/mcsim/ PR: 240966 Submitted by: Alessandro Sagratini Added: head/math/mcsim/ head/math/mcsim/Makefile (contents, props changed) head/math/mcsim/distinfo (contents, props changed) head/math/mcsim/pkg-descr (contents, props changed) head/math/mcsim/pkg-plist (contents, props changed) Modified: head/math/Makefile Modified: head/math/Makefile ============================================================================== --- head/math/Makefile Thu Oct 3 07:41:15 2019 (r513653) +++ head/math/Makefile Thu Oct 3 08:52:08 2019 (r513654) @@ -354,6 +354,7 @@ SUBDIR += matlab-installer SUBDIR += maxima SUBDIR += mbasecalc + SUBDIR += mcsim SUBDIR += metis SUBDIR += metis-edf SUBDIR += metis4 Added: head/math/mcsim/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/mcsim/Makefile Thu Oct 3 08:52:08 2019 (r513654) @@ -0,0 +1,46 @@ +# Created by: Alessando Sagratini +# $FreeBSD$ + +PORTNAME= mcsim +PORTVERSION= 6.1.0 +CATEGORIES= math +MASTER_SITES= GNU + +MAINTAINER= ale_sagra@hotmail.com +COMMENT= Monte Carlo stochastic simulations and Bayesian inference + +LICENSE= GPLv3+ + +BUILD_DEPENDS= indexinfo>=0.3.0:print/indexinfo + +USES= libtool shebangfix + +USE_LDCONFIG= yes + +INFO= mcsim + +SHEBANG_FILES= sim/makemcsim.in sim/makemcsims.in sim/makemcsimd.in + +INSTALL_TARGET= install-strip + +GNU_CONFIGURE= yes +OPTIONS_SUB= yes +CONFIGURE_ARGS= --prefix=${PREFIX} + +OPTIONS_DEFINE= GSL SUNDIALS +GSL_DESC= GNU Scientific Library support (recommended) +SUNDIALS_DESC= Sundial's Cvodes integrator + +OPTIONS_DEFAULT=GSL + +.include + +.if ${PORT_OPTIONS:MSUNDIALS} +BUILD_DEPENDS+= sundials>=3.0.0:math/sundials +.endif + +.if ${PORT_OPTIONS:MGSL} +BUILD_DEPENDS+= gsl>=2.5:math/gsl +.endif + +.include Added: head/math/mcsim/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/mcsim/distinfo Thu Oct 3 08:52:08 2019 (r513654) @@ -0,0 +1,3 @@ +TIMESTAMP = 1569855064 +SHA256 (mcsim-6.1.0.tar.gz) = ab50d8cc89cf307a1d3442dfc53cc07d11f911f390df768ce8e32db6dcf56553 +SIZE (mcsim-6.1.0.tar.gz) = 2292988 Added: head/math/mcsim/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/mcsim/pkg-descr Thu Oct 3 08:52:08 2019 (r513654) @@ -0,0 +1,8 @@ +GNU MCSim is a simulation package, written in C, which allows you to: + + * design and run your own statistical or simulation models + * perform Monte Carlo stochastic simulations + * do Bayesian inference through Markov Chain Monte Carlo simulations + * formally optimize experimental designs + +WWW: https://www.gnu.org/software/mcsim/ Added: head/math/mcsim/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/math/mcsim/pkg-plist Thu Oct 3 08:52:08 2019 (r513654) @@ -0,0 +1,85 @@ +bin/makemcsim +bin/mod +bin/makemcsims +bin/makemcsimd +include/delays.h +include/matutil.h +include/list.h +include/lex.h +include/sim.h +include/lexfn.h +include/hungtype.h +include/modiface.h +include/modelu.h +include/random.h +include/yourcode.h +include/config.h +lib/libmcsim.so.0.0.0 +lib/libmcsim.so.0 +lib/libmcsim.so +lib/libmcsim.a +%%DATADIR%%/mod/getopt.c +%%DATADIR%%/mod/getopt.h +%%DATADIR%%/mod/hungtype.h +%%DATADIR%%/mod/lex.c +%%DATADIR%%/mod/lex.h +%%DATADIR%%/mod/lexerr.c +%%DATADIR%%/mod/lexerr.h +%%DATADIR%%/mod/lexfn.c +%%DATADIR%%/mod/lexfn.h +%%DATADIR%%/mod/mod.c +%%DATADIR%%/mod/mod.h +%%DATADIR%%/mod/modd.c +%%DATADIR%%/mod/modd.h +%%DATADIR%%/mod/modi.c +%%DATADIR%%/mod/modi.h +%%DATADIR%%/mod/modiSBML.c +%%DATADIR%%/mod/modiSBML2.c +%%DATADIR%%/mod/modiSBML.h +%%DATADIR%%/mod/modo.c +%%DATADIR%%/mod/modo.h +%%DATADIR%%/mod/strutil.c +%%DATADIR%%/mod/strutil.h +%%DATADIR%%/sim/delays.c +%%DATADIR%%/sim/delays.h +%%DATADIR%%/sim/getopt.c +%%DATADIR%%/sim/getopt.h +%%DATADIR%%/sim/hungtype.h +%%DATADIR%%/sim/lex.c +%%DATADIR%%/sim/lex.h +%%DATADIR%%/sim/lexerr.c +%%DATADIR%%/sim/lexerr.h +%%DATADIR%%/sim/lexfn.c +%%DATADIR%%/sim/lexfn.h +%%DATADIR%%/sim/list.c +%%DATADIR%%/sim/list.h +%%DATADIR%%/sim/lsodes.h +%%DATADIR%%/sim/lsodes1.c +%%DATADIR%%/sim/lsodes2.c +%%DATADIR%%/sim/matutil.c +%%DATADIR%%/sim/matutil.h +%%DATADIR%%/sim/matutilo.c +%%DATADIR%%/sim/matutilo.h +%%DATADIR%%/sim/mh.c +%%DATADIR%%/sim/mh.h +%%DATADIR%%/sim/modelu.c +%%DATADIR%%/sim/modelu.h +%%DATADIR%%/sim/modiface.h +%%DATADIR%%/sim/optdsign.c +%%DATADIR%%/sim/optdsign.h +%%DATADIR%%/sim/random.c +%%DATADIR%%/sim/random.h +%%DATADIR%%/sim/sim.c +%%DATADIR%%/sim/sim.h +%%DATADIR%%/sim/simi.c +%%DATADIR%%/sim/simi.h +%%DATADIR%%/sim/siminit.c +%%DATADIR%%/sim/siminit.h +%%DATADIR%%/sim/simmonte.c +%%DATADIR%%/sim/simmonte.h +%%DATADIR%%/sim/simo.c +%%DATADIR%%/sim/simo.h +%%DATADIR%%/sim/strutil.c +%%DATADIR%%/sim/strutil.h +%%DATADIR%%/sim/yourcode.c +%%DATADIR%%/sim/yourcode.h