From owner-svn-ports-all@FreeBSD.ORG Mon May 18 01:27:48 2015 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id AF0339FF; Mon, 18 May 2015 01:27:48 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 9D57B177D; Mon, 18 May 2015 01:27:48 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id t4I1RmYW040739; Mon, 18 May 2015 01:27:48 GMT (envelope-from wen@FreeBSD.org) Received: (from wen@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id t4I1Rl0p040735; Mon, 18 May 2015 01:27:47 GMT (envelope-from wen@FreeBSD.org) Message-Id: <201505180127.t4I1Rl0p040735@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: wen set sender to wen@FreeBSD.org using -f From: Wen Heping Date: Mon, 18 May 2015 01:27:47 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r386651 - in head/biology/tinker: . files X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 18 May 2015 01:27:48 -0000 Author: wen Date: Mon May 18 01:27:46 2015 New Revision: 386651 URL: https://svnweb.freebsd.org/changeset/ports/386651 Log: - Update to 7.1.3 Modified: head/biology/tinker/Makefile head/biology/tinker/distinfo head/biology/tinker/files/patch-make__Makefile head/biology/tinker/pkg-plist Modified: head/biology/tinker/Makefile ============================================================================== --- head/biology/tinker/Makefile Mon May 18 00:47:59 2015 (r386650) +++ head/biology/tinker/Makefile Mon May 18 01:27:46 2015 (r386651) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= tinker -PORTVERSION= 7.1.2 +PORTVERSION= 7.1.3 CATEGORIES= biology MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/ Modified: head/biology/tinker/distinfo ============================================================================== --- head/biology/tinker/distinfo Mon May 18 00:47:59 2015 (r386650) +++ head/biology/tinker/distinfo Mon May 18 01:27:46 2015 (r386651) @@ -1,2 +1,2 @@ -SHA256 (tinker-7.1.2.tar.gz) = fdee18915cff9044fd083bb2271083c221db6d05de2cb98fc111b136e23e6899 -SIZE (tinker-7.1.2.tar.gz) = 28468683 +SHA256 (tinker-7.1.3.tar.gz) = c221459ac1ac423ed8c99c7ba67eaab09821c970333cd2841efb20ccbfd59095 +SIZE (tinker-7.1.3.tar.gz) = 28655947 Modified: head/biology/tinker/files/patch-make__Makefile ============================================================================== --- head/biology/tinker/files/patch-make__Makefile Mon May 18 00:47:59 2015 (r386650) +++ head/biology/tinker/files/patch-make__Makefile Mon May 18 01:27:46 2015 (r386651) @@ -1,5 +1,5 @@ ---- make/Makefile.orig 2014-12-16 05:18:02.000000000 +0200 -+++ make/Makefile 2014-12-30 10:29:50.000000000 +0200 +--- make/Makefile.orig 2015-05-18 16:58:50.748044000 +0800 ++++ make/Makefile 2015-05-18 17:07:06.767545000 +0800 @@ -33,9 +33,9 @@ ## BINDIR Hard Copies of TINKER Executables ## LINKDIR Linked Copies of TINKER Executables @@ -13,7 +13,7 @@ #################################################################### ## Known Machine Types; Uncomment One of the Following Sections ## -@@ -46,26 +46,26 @@ LINKDIR = /usr/local/bin +@@ -46,26 +46,26 @@ ## CPU Type: Intel x86 Compatible ## Compiler: GNU gfortran @@ -27,8 +27,8 @@ +F77 = ${FC} +LIBS = +F77FLAGS = -c ${FFLAGS} -+OPTFLAGS = -+LIBFLAGS = -rcuv ++OPTFLAGS = ++LIBFLAGS = -crusv +RANLIB = ranlib +LINKFLAGS = ${LDFLAGS} @@ -54,7 +54,7 @@ ## Machine: Generic Linux ## CPU Type: Intel x86 Compatible (also AMD) -@@ -106,7 +106,7 @@ LINKFLAGS = $(OPTFLAGS) -static-libgcc +@@ -106,7 +106,7 @@ #LIBFLAGS = -crusv #RANLIB = ranlib -c #LINKFLAGS = $(OPTFLAGS) -static-intel -mmacosx-version-min=10.6 \ @@ -63,31 +63,29 @@ ## Machine: Macintosh ## CPU Type: Intel Xeon -@@ -710,93 +710,88 @@ EXEFILES = alchemy.x \ +@@ -710,92 +710,88 @@ xyzpdb.x \ xyzsybyl.x -%.o: %.f - ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ -- ++.SUFFIXES: .x + -%.o: %.c - ${CC} ${CFLAGS} ${INCLUDEDIR} ${OPTFLAGS} $< -+.SUFFIXES: .x ++.f.o: ++ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ -%.x: %.o libtinker.a - ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@ -+.f.o: -+ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ - --all: -- ${EXEFILES} +.o.x: libtinker.a + ${F77} ${LINKFLAGS} -o $@ $< libtinker.a ${LIBS} + all: ${EXEFILES} + -install: - rename -+all: ${EXEFILES} - +- clean: rm -f *.o *.mod *.a *.x @@ -226,7 +224,7 @@ rm -f $(LINKDIR)/anneal rm -f $(LINKDIR)/archive rm -f $(LINKDIR)/bar -@@ -859,7 +854,7 @@ remove_links: +@@ -858,7 +854,7 @@ create_links: ln -s $(BINDIR)/alchemy $(LINKDIR)/alchemy Modified: head/biology/tinker/pkg-plist ============================================================================== --- head/biology/tinker/pkg-plist Mon May 18 00:47:59 2015 (r386650) +++ head/biology/tinker/pkg-plist Mon May 18 01:27:46 2015 (r386651) @@ -77,6 +77,10 @@ bin/xyzsybyl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.xyz +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/anthracene.key +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/anthracene.xyz +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/aspirin.key +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/aspirin.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.int %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.xyz