From owner-freebsd-python@freebsd.org Mon Jan 4 23:01:18 2016 Return-Path: Delivered-To: freebsd-python@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id B165CA6203F for ; Mon, 4 Jan 2016 23:01:18 +0000 (UTC) (envelope-from mi+thun@aldan.algebra.com) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 96A461F1B for ; Mon, 4 Jan 2016 23:01:18 +0000 (UTC) (envelope-from mi+thun@aldan.algebra.com) Received: by mailman.ysv.freebsd.org (Postfix) id 96599A6203E; Mon, 4 Jan 2016 23:01:18 +0000 (UTC) Delivered-To: python@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 7D926A6203C for ; Mon, 4 Jan 2016 23:01:18 +0000 (UTC) (envelope-from mi+thun@aldan.algebra.com) Received: from vms173003pub.verizon.net (vms173003pub.verizon.net [206.46.173.3]) (using TLSv1 with cipher DHE-RSA-AES128-SHA (128/128 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 60DD51F19 for ; Mon, 4 Jan 2016 23:01:17 +0000 (UTC) (envelope-from mi+thun@aldan.algebra.com) MIME-version: 1.0 Received: from aldan.narawntapu ([100.1.236.52]) by vms173003.mailsrvcs.net (Oracle Communications Messaging Server 7.0.5.34.0 64bit (built Oct 14 2014)) with ESMTPA id <0O0G00J0M7T80Y50@vms173003.mailsrvcs.net> for python@FreeBSD.org; Mon, 04 Jan 2016 16:00:49 -0600 (CST) X-CMAE-Score: 0 X-CMAE-Analysis: v=2.1 cv=EdU1O6SC c=1 sm=1 tr=0 a=UorMnhrCY2jH/mPejITChw==:117 a=LaogzpLLAAAA:8 a=oR5dmqMzAAAA:8 a=7aQ_Q-yQQ-AA:10 a=r77TgQKjGQsHNAKrUKIA:9 a=4pYE2rztLuECmnN_KYQA:9 a=pILNOxqGKmIA:10 a=MT8OakBRaYXNiUCOKZAA:9 a=-lrJVO0D_xGNiZrI:21 a=_W_S_7VecoQA:10 Subject: SOLVED: numpy would not load: libgcc_s vs. libgfortran To: Olivier Duchateau References: <568AA168.5090400@aldan.algebra.com> <20160104193453.2ae62e7a01ab0a0cd845e296@gmail.com> <568AC046.8040300@aldan.algebra.com> <20160104213150.4e47df03583e70cef356a51d@gmail.com> <568AE454.6010604@aldan.algebra.com> Cc: python@FreeBSD.org From: "Mikhail T." X-Enigmail-Draft-Status: N1110 Message-id: <568AEB8C.2000805@aldan.algebra.com> Date: Mon, 04 Jan 2016 17:00:44 -0500 User-Agent: Mozilla/5.0 (X11; FreeBSD amd64; rv:38.0) Gecko/20100101 Thunderbird/38.4.0 In-reply-to: <568AE454.6010604@aldan.algebra.com> Content-Type: text/plain; CHARSET=US-ASCII Content-Transfer-Encoding: 7BIT X-Content-Filtered-By: Mailman/MimeDel 2.1.20 X-BeenThere: freebsd-python@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: FreeBSD-specific Python issues List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 04 Jan 2016 23:01:18 -0000 On 04.01.2016 16:29, Mikhail T. wrote: > ImportError: > /opt/lib/python2.7/site-packages/numpy/core/multiarray.so: Undefined > symbol "cblas_cdotc_sub" Ok, the above went away, when I rebuilt all of the Fortran-using dependencies of numpy with gfortran5. Don't know, if they were built incorrectly somehow, or if something is wrong with gfortran48. My one-liner test script now "works", but the original problem is still here -- only now it complains about gcc5's libgfortran: File "/opt/lib/python2.7/site-packages/numpy/core/__init__.py", line 14, in from . import multiarray ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by /opt/lib/gcc5/libgfortran.so.3 not found I wonder, if this has something to do with my setting PYTHONPATH -- I need the not-yet-installed mediagoblin packages to be found in ${WRKSRC} by the tests. What is the proper way of to do this? Thank you! -mi