Date: Sat, 10 Oct 2020 07:43:48 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r551860 - in head/graphics: . py-tifffile Message-ID: <202010100743.09A7hm8j062647@repo.freebsd.org>
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Author: sunpoet Date: Sat Oct 10 07:43:48 2020 New Revision: 551860 URL: https://svnweb.freebsd.org/changeset/ports/551860 Log: Add py-tifffile 2020.10.1 Tifffile is a Python library to - store numpy arrays in TIFF (Tagged Image File Format) files, and - read image and metadata from TIFF-like files used in bioimaging. Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI, NIHImage, ImageJ, MicroManager, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, ZIF (Zoomable Image File Format), QPTIFF (QPI), NDPI, and GeoTIFF files. Image data can be read as numpy arrays or zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels. Numpy arrays can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form. A subset of the TIFF specification is supported, mainly 8, 16, 32 and 64-bit integer, 16, 32 and 64-bit float, grayscale and multi-sample images. Specifically, CCITT and OJPEG compression, chroma subsampling without JPEG compression, color space transformations, samples with differing types, or IPTC and XMP metadata are not implemented. WWW: https://github.com/cgohlke/tifffile Added: head/graphics/py-tifffile/ head/graphics/py-tifffile/Makefile (contents, props changed) head/graphics/py-tifffile/distinfo (contents, props changed) head/graphics/py-tifffile/pkg-descr (contents, props changed) Modified: head/graphics/Makefile Modified: head/graphics/Makefile ============================================================================== --- head/graphics/Makefile Sat Oct 10 07:43:42 2020 (r551859) +++ head/graphics/Makefile Sat Oct 10 07:43:48 2020 (r551860) @@ -876,6 +876,7 @@ SUBDIR += py-svg.path SUBDIR += py-svgwrite SUBDIR += py-termtosvg + SUBDIR += py-tifffile SUBDIR += py-toyplot SUBDIR += py-traitsui SUBDIR += py-vecrec Added: head/graphics/py-tifffile/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/py-tifffile/Makefile Sat Oct 10 07:43:48 2020 (r551860) @@ -0,0 +1,21 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= tifffile +PORTVERSION= 2020.10.1 +CATEGORIES= graphics python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Read and write TIFF(r) files + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= python:3.7+ +USE_PYTHON= autoplist concurrent distutils + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/graphics/py-tifffile/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/py-tifffile/distinfo Sat Oct 10 07:43:48 2020 (r551860) @@ -0,0 +1,3 @@ +TIMESTAMP = 1601996442 +SHA256 (tifffile-2020.10.1.tar.gz) = 799feeccc91965b69e1288c51a1d1118faec7f40b2eb89ad2979591b85324830 +SIZE (tifffile-2020.10.1.tar.gz) = 224780 Added: head/graphics/py-tifffile/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/py-tifffile/pkg-descr Sat Oct 10 07:43:48 2020 (r551860) @@ -0,0 +1,22 @@ +Tifffile is a Python library to +- store numpy arrays in TIFF (Tagged Image File Format) files, and +- read image and metadata from TIFF-like files used in bioimaging. + +Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI, +NIHImage, ImageJ, MicroManager, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, +ZIF (Zoomable Image File Format), QPTIFF (QPI), NDPI, and GeoTIFF files. + +Image data can be read as numpy arrays or zarr arrays/groups from strips, tiles, +pages (IFDs), SubIFDs, higher order series, and pyramidal levels. + +Numpy arrays can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack +compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, +predicted, or compressed form. + +A subset of the TIFF specification is supported, mainly 8, 16, 32 and 64-bit +integer, 16, 32 and 64-bit float, grayscale and multi-sample images. +Specifically, CCITT and OJPEG compression, chroma subsampling without JPEG +compression, color space transformations, samples with differing types, or IPTC +and XMP metadata are not implemented. + +WWW: https://github.com/cgohlke/tifffile
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