From owner-svn-ports-head@FreeBSD.ORG Wed Jan 29 17:31:06 2014 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 30EC5989; Wed, 29 Jan 2014 17:31:06 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 11DA11235; Wed, 29 Jan 2014 17:31:06 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.7/8.14.7) with ESMTP id s0THV5Cw061680; Wed, 29 Jan 2014 17:31:05 GMT (envelope-from thierry@svn.freebsd.org) Received: (from thierry@localhost) by svn.freebsd.org (8.14.7/8.14.7/Submit) id s0THV5L3061674; Wed, 29 Jan 2014 17:31:05 GMT (envelope-from thierry@svn.freebsd.org) Message-Id: <201401291731.s0THV5L3061674@svn.freebsd.org> From: Thierry Thomas Date: Wed, 29 Jan 2014 17:31:05 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r341763 - in head/science/minc2: . files X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 29 Jan 2014 17:31:06 -0000 Author: thierry Date: Wed Jan 29 17:31:04 2014 New Revision: 341763 URL: http://svnweb.freebsd.org/changeset/ports/341763 QAT: https://qat.redports.org/buildarchive/r341763/ Log: - Downgrade to the latest stable release; - Release maintainership. Since I'm there, support staging. PR: ports/182077 Submitted by: Jason Bacon (maintainer) Added: head/science/minc2/files/ head/science/minc2/files/patch-conversion_minctoecat_machine_indep.c (contents, props changed) Modified: head/science/minc2/Makefile head/science/minc2/distinfo head/science/minc2/pkg-plist Modified: head/science/minc2/Makefile ============================================================================== --- head/science/minc2/Makefile Wed Jan 29 17:18:46 2014 (r341762) +++ head/science/minc2/Makefile Wed Jan 29 17:31:04 2014 (r341763) @@ -11,32 +11,28 @@ # Of course, the netcdf port must be installed first. PORTNAME= minc -PORTVERSION= 2.2.00 -PORTREVISION= 1 +PORTVERSION= 2.0.18 +PORTEPOCH= 1 CATEGORIES= science biology -MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ +MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ \ + http://www.nitrc.org/frs/download.php/801/ PKGNAMESUFFIX= 2 -MAINTAINER= jwbacon@tds.net +MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF -BROKEN= Does not build with new hdf5 version - LICENSE= BSD -LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf \ - hdf5:${PORTSDIR}/science/hdf5 +LIB_DEPENDS= libnetcdf.so.4:${PORTSDIR}/science/netcdf \ + libhdf5.so.0:${PORTSDIR}/science/hdf5 +USE_AUTOTOOLS= libtool USE_LDCONFIG= yes -USES= cmake:outsource bison:build CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include -DH5_USE_16_API LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS} -CMAKE_ARGS= -DMINC2_BUILD_SHARED_LIBS:BOOL=YES +CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes CONFLICTS= minc-1* zh-tk-[0-9]* - -NO_STAGE= yes -post-install: - ${CAT} ${PKGMESSAGE} +LATEST_LINK= minc2 .include Modified: head/science/minc2/distinfo ============================================================================== --- head/science/minc2/distinfo Wed Jan 29 17:18:46 2014 (r341762) +++ head/science/minc2/distinfo Wed Jan 29 17:31:04 2014 (r341763) @@ -1,2 +1,2 @@ -SHA256 (minc-2.2.00.tar.gz) = e689d3612db6241125e3155d5a5c109d4da6f4bd774cc00a7e6729f2a790a174 -SIZE (minc-2.2.00.tar.gz) = 1665189 +SHA256 (minc-2.0.18.tar.gz) = 674cc89c43edfdb1957251c0124ea83252740c667cf3c4d9fc6183dcdb10f3e5 +SIZE (minc-2.0.18.tar.gz) = 1628038 Added: head/science/minc2/files/patch-conversion_minctoecat_machine_indep.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/minc2/files/patch-conversion_minctoecat_machine_indep.c Wed Jan 29 17:31:04 2014 (r341763) @@ -0,0 +1,20 @@ +--- conversion/minctoecat/machine_indep.c.orig 2007-03-29 07:08:46.000000000 +0200 ++++ conversion/minctoecat/machine_indep.c 2014-01-28 22:55:57.000000000 +0100 +@@ -61,7 +61,7 @@ + } + + #if defined(__alpha) || defined(_WIN32) /* LITTLE_ENDIAN : alpha, intel */ +-ftovaxf(f, bufr) ++void ftovaxf(f, bufr) + float f; + unsigned short *bufr; + { +@@ -84,7 +84,7 @@ + bufr[1] = ret >>16; + } + #else /* BIG ENDIAN : sun hp sgi*/ +-ftovaxf(orig,number) ++void ftovaxf(orig,number) + unsigned short number[2]; + float orig; + { Modified: head/science/minc2/pkg-plist ============================================================================== --- head/science/minc2/pkg-plist Wed Jan 29 17:18:46 2014 (r341762) +++ head/science/minc2/pkg-plist Wed Jan 29 17:31:04 2014 (r341763) @@ -3,7 +3,6 @@ bin/ecattominc bin/invert_raw_image bin/minc_modify_header bin/mincaverage -bin/mincblob bin/minccalc bin/mincconcat bin/mincconvert @@ -21,11 +20,9 @@ bin/minclookup bin/mincmakescalar bin/mincmakevector bin/mincmath -bin/mincmorph bin/mincpik bin/mincresample bin/mincreshape -bin/mincsample bin/mincstats bin/minctoecat bin/minctoraw @@ -36,9 +33,11 @@ bin/nii2mnc bin/rawtominc bin/transformtags bin/upet2mnc +bin/vff2mnc bin/voxeltoworld bin/worldtovoxel bin/xfmconcat +bin/xfmflip bin/xfminvert include/ParseArgv.h include/minc.h @@ -65,12 +64,52 @@ include/volume_io/vol_io_prototypes.h include/volume_io/volume.h include/volume_io/volume_cache.h include/voxel_loop.h -lib/MINC2Config.cmake -lib/UseMINC2.cmake +lib/libminc2.a +lib/libminc2.la lib/libminc2.so lib/libminc2.so.2 -lib/libminc2.so.2.2.00 +lib/libvolume_io2.a +lib/libvolume_io2.la lib/libvolume_io2.so lib/libvolume_io2.so.2 -lib/libvolume_io2.so.2.2.00 +man/man1/dcm2mnc.1.gz +man/man1/ecattominc.1.gz +man/man1/invert_raw_image.1.gz +man/man1/minc_modify_header.1.gz +man/man1/mincaverage.1.gz +man/man1/minccalc.1.gz +man/man1/mincconcat.1.gz +man/man1/mincconvert.1.gz +man/man1/minccopy.1.gz +man/man1/mincdiff.1.gz +man/man1/mincedit.1.gz +man/man1/mincexpand.1.gz +man/man1/mincextract.1.gz +man/man1/mincgen.1.gz +man/man1/mincheader.1.gz +man/man1/minchistory.1.gz +man/man1/mincinfo.1.gz +man/man1/minclookup.1.gz +man/man1/mincmakescalar.1.gz +man/man1/mincmakevector.1.gz +man/man1/mincmath.1.gz +man/man1/mincpik.1.gz +man/man1/mincresample.1.gz +man/man1/mincreshape.1.gz +man/man1/mincstats.1.gz +man/man1/minctoecat.1.gz +man/man1/minctoraw.1.gz +man/man1/mincview.1.gz +man/man1/mincwindow.1.gz +man/man1/mnc2nii.1.gz +man/man1/nii2mnc.1.gz +man/man1/rawtominc.1.gz +man/man1/transformtags.1.gz +man/man1/upet2mnc.1.gz +man/man1/vff2mnc.1.gz +man/man1/voxeltoworld.1.gz +man/man1/xfmconcat.1.gz +man/man1/xfmflip.1.gz +man/man1/xfminvert.1.gz +man/man3/ParseArgv.3.gz @dirrm include/volume_io