Date: Fri, 24 Jul 2020 07:08:06 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r543011 - in head/biology: . rubygem-bio-old-biofetch-emulator Message-ID: <202007240708.06O786Ed041739@repo.freebsd.org>
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Author: sunpoet Date: Fri Jul 24 07:08:05 2020 New Revision: 543011 URL: https://svnweb.freebsd.org/changeset/ports/543011 Log: Add rubygem-bio-old-biofetch-emulator 1.0.0 bio-old-biofetch-emulator emulates Bio::Fetch object in BioRuby as if discontinued BioRuby BioFetch server were still alive. It overrides methods and objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it intercepts all requests and converts them into existing web services such as TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp). WWW: https://github.com/ngoto/bioruby-old-biofetch-emulator Added: head/biology/rubygem-bio-old-biofetch-emulator/ head/biology/rubygem-bio-old-biofetch-emulator/Makefile (contents, props changed) head/biology/rubygem-bio-old-biofetch-emulator/distinfo (contents, props changed) head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Jul 24 07:08:00 2020 (r543010) +++ head/biology/Makefile Fri Jul 24 07:08:05 2020 (r543011) @@ -149,6 +149,7 @@ SUBDIR += ruby-bio SUBDIR += rubygem-bio SUBDIR += rubygem-bio-executables + SUBDIR += rubygem-bio-old-biofetch-emulator SUBDIR += samtools SUBDIR += scrm SUBDIR += seaview Added: head/biology/rubygem-bio-old-biofetch-emulator/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/Makefile Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,22 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= bio-old-biofetch-emulator +PORTVERSION= 1.0.0 +CATEGORIES= biology rubygems +MASTER_SITES= RG + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Emulate Bio::Fetch object + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +RUN_DEPENDS= rubygem-bio>=1.4.2:biology/rubygem-bio + +USES= gem +USE_RUBY= yes + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/rubygem-bio-old-biofetch-emulator/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/distinfo Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,3 @@ +TIMESTAMP = 1595416509 +SHA256 (rubygem/bio-old-biofetch-emulator-1.0.0.gem) = 2cebae441cd8d680cbf76df5301b7d45a3d086974cdc016b9148a15dfb8b6d8b +SIZE (rubygem/bio-old-biofetch-emulator-1.0.0.gem) = 11264 Added: head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-old-biofetch-emulator/pkg-descr Fri Jul 24 07:08:05 2020 (r543011) @@ -0,0 +1,7 @@ +bio-old-biofetch-emulator emulates Bio::Fetch object in BioRuby as if +discontinued BioRuby BioFetch server were still alive. It overrides methods and +objects in Bio::Fetch, and if the old BioRuby BioFetch server's URL is given, it +intercepts all requests and converts them into existing web services such as +TogoWS, KEGG REST API, NCBI E-Utilities, and GenomeNet(genome.jp). + +WWW: https://github.com/ngoto/bioruby-old-biofetch-emulator
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