Date: Fri, 24 Jul 2020 07:08:11 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r543012 - in head/biology: . rubygem-bio-shell Message-ID: <202007240708.06O78BCL041905@repo.freebsd.org>
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Author: sunpoet Date: Fri Jul 24 07:08:11 2020 New Revision: 543012 URL: https://svnweb.freebsd.org/changeset/ports/543012 Log: Add rubygem-bio-shell 1.0.0 bio-shell, providing BioRuby Shell, is a command-line interface for BioRuby, an open source bioinformatics library for Ruby. This code has historically been part of the BioRuby gem, but has been split into its own gem as part of an effort to modularize BioRuby. bio-shell and many more plugins are available at biogems.info. WWW: https://github.com/bioruby/bioruby-shell Added: head/biology/rubygem-bio-shell/ head/biology/rubygem-bio-shell/Makefile (contents, props changed) head/biology/rubygem-bio-shell/distinfo (contents, props changed) head/biology/rubygem-bio-shell/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri Jul 24 07:08:05 2020 (r543011) +++ head/biology/Makefile Fri Jul 24 07:08:11 2020 (r543012) @@ -150,6 +150,7 @@ SUBDIR += rubygem-bio SUBDIR += rubygem-bio-executables SUBDIR += rubygem-bio-old-biofetch-emulator + SUBDIR += rubygem-bio-shell SUBDIR += samtools SUBDIR += scrm SUBDIR += seaview Added: head/biology/rubygem-bio-shell/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-shell/Makefile Fri Jul 24 07:08:11 2020 (r543012) @@ -0,0 +1,26 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= bio-shell +PORTVERSION= 1.0.0 +CATEGORIES= biology rubygems +MASTER_SITES= RG + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Command-line interface on BioRuby + +LICENSE= BSD2CLAUSE RUBY +LICENSE_COMB= dual +LICENSE_FILE_BSD2CLAUSE=${WRKSRC}/BSDL +LICENSE_FILE_RUBY= ${WRKSRC}/COPYING + +RUN_DEPENDS= rubygem-bio>=2.0.0:biology/rubygem-bio + +USES= gem +USE_RUBY= yes + +NO_ARCH= yes + +PLIST_FILES= bin/bioruby + +.include <bsd.port.mk> Added: head/biology/rubygem-bio-shell/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-shell/distinfo Fri Jul 24 07:08:11 2020 (r543012) @@ -0,0 +1,3 @@ +TIMESTAMP = 1595416511 +SHA256 (rubygem/bio-shell-1.0.0.gem) = 5a41c4226c12de49476bda8e59dd17ac3340b15cebc2f241842334d9de822528 +SIZE (rubygem/bio-shell-1.0.0.gem) = 46592 Added: head/biology/rubygem-bio-shell/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/rubygem-bio-shell/pkg-descr Fri Jul 24 07:08:11 2020 (r543012) @@ -0,0 +1,8 @@ +bio-shell, providing BioRuby Shell, is a command-line interface for BioRuby, an +open source bioinformatics library for Ruby. + +This code has historically been part of the BioRuby gem, but has been split into +its own gem as part of an effort to modularize BioRuby. bio-shell and many more +plugins are available at biogems.info. + +WWW: https://github.com/bioruby/bioruby-shell
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