From owner-dev-commits-ports-main@freebsd.org Mon Sep 6 14:29:16 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id D08D6675E50; Mon, 6 Sep 2021 14:29:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4H39l04D7Wz3lYb; Mon, 6 Sep 2021 14:29:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6E5BC20880; Mon, 6 Sep 2021 14:29:16 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 186ETG7h046594; Mon, 6 Sep 2021 14:29:16 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 186ETGCp046593; Mon, 6 Sep 2021 14:29:16 GMT (envelope-from git) Date: Mon, 6 Sep 2021 14:29:16 GMT Message-Id: <202109061429.186ETGCp046593@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 0ec8be4158ca - main - biology/biostar-tools: Add mafft, clustal-omega, pywgsim deps MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0ec8be4158cacaa92d45914082789d936e8e678b Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 06 Sep 2021 14:29:16 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=0ec8be4158cacaa92d45914082789d936e8e678b commit 0ec8be4158cacaa92d45914082789d936e8e678b Author: Jason W. Bacon AuthorDate: 2021-09-06 14:27:20 +0000 Commit: Jason W. Bacon CommitDate: 2021-09-06 14:27:20 +0000 biology/biostar-tools: Add mafft, clustal-omega, pywgsim deps Short-read alignment related tools --- biology/biostar-tools/Makefile | 7 +++++-- biology/biostar-tools/distinfo | 2 +- 2 files changed, 6 insertions(+), 3 deletions(-) diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index 2fbb5fbb05e0..d7c8d53149cb 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,5 +1,5 @@ PORTNAME= biostar-tools -PORTVERSION= 1.4.0 +PORTVERSION= 1.5.0 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -55,7 +55,10 @@ RUN_DEPENDS= wget>0:ftp/wget \ ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \ flash>0:biology/flash \ bfc:biology/bfc \ - Jellyfish>0:biology/jellyfish + Jellyfish>0:biology/jellyfish \ + mafft>0:biology/mafft \ + clustal-omega>0:biology/clustal-omega \ + ${PYTHON_PKGNAMEPREFIX}pywgsim>0:biology/py-pywgsim@${PY_FLAVOR} USES= metaport python diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index 631b88b12747..1573e13c2ab6 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1629823534 +TIMESTAMP = 1630938398