Date: Fri, 13 Dec 2024 11:29:04 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 7ffdb6e42d48 - main - science/py-dipy: update 1.9.0 =?utf-8?Q?=E2=86=92?= 1.10.0 Message-ID: <202412131129.4BDBT465024744@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=7ffdb6e42d488fdf26c015d1caba125cb7a7b338 commit 7ffdb6e42d488fdf26c015d1caba125cb7a7b338 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2024-12-13 11:23:31 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2024-12-13 11:28:49 +0000 science/py-dipy: update 1.9.0 → 1.10.0 Reported by: portscout --- science/py-dipy/Makefile | 7 +- science/py-dipy/distinfo | 6 +- science/py-dipy/files/patch-pyproject.toml | 31 +++----- science/py-dipy/pkg-plist | 109 ++++++++++++++++++++++------- 4 files changed, 99 insertions(+), 54 deletions(-) diff --git a/science/py-dipy/Makefile b/science/py-dipy/Makefile index 1db26a3a03c2..39b110e8e9e9 100644 --- a/science/py-dipy/Makefile +++ b/science/py-dipy/Makefile @@ -1,5 +1,5 @@ PORTNAME= dipy -DISTVERSION= 1.9.0 +DISTVERSION= 1.10.0 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,7 +11,8 @@ WWW= https://dipy.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE -BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cython3>0:lang/cython3@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}meson-python>0:devel/meson-python@${PY_FLAVOR} \ ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3.1.0:science/py-h5py@${PY_FLAVOR} \ @@ -30,7 +31,7 @@ TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}fury>0:graphics/py-fury@${PY_FLAVOR} \ TEST_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}cvxpy>0:math/py-cvxpy@${PY_FLAVOR} # "doc" extra dependencies, see dipy/info.py USES= python shebangfix -USE_PYTHON= pep517 concurrent cython pytest # autoplist is broken: it produces incorrect entries and unnecessary files are also placed under doc/ +USE_PYTHON= pep517 concurrent pytest # autoplist is broken: it produces incorrect entries and unnecessary files are also placed under doc/ SHEBANG_GLOB= *.sh *.py diff --git a/science/py-dipy/distinfo b/science/py-dipy/distinfo index 1cb6df30011c..3a3cc94a8a77 100644 --- a/science/py-dipy/distinfo +++ b/science/py-dipy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1713770534 -SHA256 (dipy-1.9.0.tar.gz) = eb0f7a211202d48f30961743528c86ec9804fcba8ca440a7484e0a113fa2cc4f -SIZE (dipy-1.9.0.tar.gz) = 6518336 +TIMESTAMP = 1734080750 +SHA256 (dipy-1.10.0.tar.gz) = b9c8559c1ceec118bd8ebafa1c654582fc13d64c66266ca4d15a2df2367be870 +SIZE (dipy-1.10.0.tar.gz) = 6733171 diff --git a/science/py-dipy/files/patch-pyproject.toml b/science/py-dipy/files/patch-pyproject.toml index d37ccaa7aeb2..c0c51c30c348 100644 --- a/science/py-dipy/files/patch-pyproject.toml +++ b/science/py-dipy/files/patch-pyproject.toml @@ -1,24 +1,11 @@ ---- pyproject.toml.orig 2023-12-17 07:57:19 UTC +--- pyproject.toml.orig 2024-12-13 10:44:59 UTC +++ pyproject.toml -@@ -137,10 +137,10 @@ requires = [ - "packaging>21.0", - "wheel", - "numpy==1.19.5; python_version=='3.8' and platform_python_implementation != 'PyPy'", -- "numpy==1.22.4; python_version=='3.9' and platform_python_implementation != 'PyPy'", -- "numpy==1.22.4; python_version=='3.10' and platform_system=='Windows' and platform_python_implementation != 'PyPy'", -- "numpy==1.22.4; python_version=='3.10' and platform_system != 'Windows' and platform_python_implementation != 'PyPy'", -- "numpy==1.23.3; python_version=='3.11' and platform_python_implementation != 'PyPy'", -+ "numpy>=1.22.4; python_version=='3.9' and platform_python_implementation != 'PyPy'", -+ "numpy>=1.22.4; python_version=='3.10' and platform_system=='Windows' and platform_python_implementation != 'PyPy'", -+ "numpy>=1.22.4; python_version=='3.10' and platform_system != 'Windows' and platform_python_implementation != 'PyPy'", -+ "numpy>=1.23.3; python_version=='3.11' and platform_python_implementation != 'PyPy'", - "numpy>=1.26.0b1; python_version>='3.12'", - "numpy; python_version>='3.8' and platform_python_implementation=='PyPy'", +@@ -149,7 +149,7 @@ requires = [ + # Note that building against numpy 1.x works fine too - users and + # redistributors can do this by installing the numpy version they like and + # disabling build isolation. +- "numpy>=2.0.0rc1; python_version>='3.9' and platform_python_implementation!='PyPy'", ++ "numpy; python_version>='3.9' and platform_python_implementation!='PyPy'", + "numpy; python_version>='3.9' and platform_python_implementation=='PyPy'", ] -@@ -177,4 +177,4 @@ Metrics = [ - addopts = "--ignore=dipy/testing/decorators.py --ignore-glob='bench*.py' --ignore-glob=**/benchmarks/*" - filterwarnings = [ - 'ignore:.*You do not have FURY installed.*:UserWarning', --] -\ No newline at end of file -+] + diff --git a/science/py-dipy/pkg-plist b/science/py-dipy/pkg-plist index cd94dfa0e97f..8db59397f174 100644 --- a/science/py-dipy/pkg-plist +++ b/science/py-dipy/pkg-plist @@ -27,27 +27,28 @@ bin/dipy_horizon bin/dipy_info bin/dipy_labelsbundles bin/dipy_mask +bin/dipy_nifti2pam bin/dipy_median_otsu +bin/dipy_pam2nifti bin/dipy_recobundles bin/dipy_reslice bin/dipy_sh_convert_mrtrix bin/dipy_slr bin/dipy_snr_in_cc bin/dipy_split +bin/dipy_tensor2pam bin/dipy_track bin/dipy_track_pft -%%PYTHON_SITELIBDIR%%/dipy-1.9.0.dist-info/LICENSE -%%PYTHON_SITELIBDIR%%/dipy-1.9.0.dist-info/METADATA -%%PYTHON_SITELIBDIR%%/dipy-1.9.0.dist-info/RECORD -%%PYTHON_SITELIBDIR%%/dipy-1.9.0.dist-info/WHEEL -%%PYTHON_SITELIBDIR%%/dipy-1.9.0.dist-info/entry_points.txt +%%PYTHON_SITELIBDIR%%/dipy-1.10.0.dist-info/LICENSE +%%PYTHON_SITELIBDIR%%/dipy-1.10.0.dist-info/METADATA +%%PYTHON_SITELIBDIR%%/dipy-1.10.0.dist-info/RECORD +%%PYTHON_SITELIBDIR%%/dipy-1.10.0.dist-info/WHEEL +%%PYTHON_SITELIBDIR%%/dipy-1.10.0.dist-info/entry_points.txt %%PYTHON_SITELIBDIR%%/dipy/__init__.py %%PYTHON_SITELIBDIR%%/dipy/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/__pycache__/conftest%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/__pycache__/conftest%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/__pycache__/pkg_info%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/__pycache__/pkg_info%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/__pycache__/version%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/__pycache__/version%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/align/__init__.py @@ -441,26 +442,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/nn/__init__.py %%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/cnn_1d_denoising%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/cnn_1d_denoising%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/deepn4%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/deepn4%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/model%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/model%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/synb0%%PYTHON_EXT_SUFFIX%%.opt-1.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/synb0%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/nn/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.pyc -%%PYTHON_SITELIBDIR%%/dipy/nn/cnn_1d_denoising.py -%%PYTHON_SITELIBDIR%%/dipy/nn/deepn4.py -%%PYTHON_SITELIBDIR%%/dipy/nn/evac.py -%%PYTHON_SITELIBDIR%%/dipy/nn/histo_resdnn.py -%%PYTHON_SITELIBDIR%%/dipy/nn/model.py -%%PYTHON_SITELIBDIR%%/dipy/nn/synb0.py %%PYTHON_SITELIBDIR%%/dipy/nn/tests/__init__.py %%PYTHON_SITELIBDIR%%/dipy/nn/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/nn/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc @@ -485,13 +468,44 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/nn/tests/test_synb0.py %%PYTHON_SITELIBDIR%%/dipy/nn/tests/test_tf.py %%PYTHON_SITELIBDIR%%/dipy/nn/tests/test_utils.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__init__.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/cnn_1d_denoising%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/cnn_1d_denoising%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/deepn4%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/deepn4%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/model%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/model%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/synb0%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/__pycache__/synb0%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/cnn_1d_denoising.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/deepn4.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/evac.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/histo_resdnn.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/model.py +%%PYTHON_SITELIBDIR%%/dipy/nn/tf/synb0.py +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__init__.py +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/evac%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/__pycache__/histo_resdnn%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/evac.py +%%PYTHON_SITELIBDIR%%/dipy/nn/torch/histo_resdnn.py %%PYTHON_SITELIBDIR%%/dipy/nn/utils.py -%%PYTHON_SITELIBDIR%%/dipy/pkg_info.py %%PYTHON_SITELIBDIR%%/dipy/reconst/__init__.py %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/base%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/base%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/bingham%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/bingham%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/cache%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/cache%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/cross_validation%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -540,7 +554,10 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/shore%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/weights_method%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/__pycache__/weights_method%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/base.py +%%PYTHON_SITELIBDIR%%/dipy/reconst/bingham.py %%PYTHON_SITELIBDIR%%/dipy/reconst/cache.py %%PYTHON_SITELIBDIR%%/dipy/reconst/cross_validation.py %%PYTHON_SITELIBDIR%%/dipy/reconst/csdeconv.py @@ -570,6 +587,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__init__.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_bingham%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_bingham%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_cache%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_cache%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_cross_validation%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -634,6 +653,9 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_utils%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_vec_val_vect%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_vec_val_vect%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_weights_method%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/__pycache__/test_weights_method%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_bingham.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_cache.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_cross_validation.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_csdeconv.py @@ -666,8 +688,10 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_shore_odf.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_utils.py %%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_vec_val_vect.py +%%PYTHON_SITELIBDIR%%/dipy/reconst/tests/test_weights_method.py %%PYTHON_SITELIBDIR%%/dipy/reconst/utils.py %%PYTHON_SITELIBDIR%%/dipy/reconst/vec_val_sum%%PYTHON_EXT_SUFFIX%%.so +%%PYTHON_SITELIBDIR%%/dipy/reconst/weights_method.py %%PYTHON_SITELIBDIR%%/dipy/segment/__init__.py %%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc @@ -685,6 +709,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/threshold%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/tissue%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/tissue%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/bundles.py %%PYTHON_SITELIBDIR%%/dipy/segment/clustering.py %%PYTHON_SITELIBDIR%%/dipy/segment/clustering_algorithms%%PYTHON_EXT_SUFFIX%%.so @@ -719,6 +745,10 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_qbx%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_quickbundles%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_quickbundles%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_tissue%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_tissue%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/__pycache__/test_utils%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_adjustment.py %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_bundles.py %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_clustering.py @@ -729,8 +759,11 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_mrf.py %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_qbx.py %%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_quickbundles.py +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_tissue.py +%%PYTHON_SITELIBDIR%%/dipy/segment/tests/test_utils.py %%PYTHON_SITELIBDIR%%/dipy/segment/threshold.py %%PYTHON_SITELIBDIR%%/dipy/segment/tissue.py +%%PYTHON_SITELIBDIR%%/dipy/segment/utils.py %%PYTHON_SITELIBDIR%%/dipy/sims/__init__.py %%PYTHON_SITELIBDIR%%/dipy/sims/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/sims/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc @@ -754,19 +787,31 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/analysis%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/analysis%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/qc%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/qc%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/resampling%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/resampling%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/sketching%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/__pycache__/sketching%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/analysis.py +%%PYTHON_SITELIBDIR%%/dipy/stats/qc.py %%PYTHON_SITELIBDIR%%/dipy/stats/resampling.py +%%PYTHON_SITELIBDIR%%/dipy/stats/sketching.py %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__init__.py %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_analysis%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_analysis%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_qc%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_qc%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_resampling%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_resampling%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_sketching%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/__pycache__/test_sketching%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/stats/tests/test_analysis.py +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/test_qc.py %%PYTHON_SITELIBDIR%%/dipy/stats/tests/test_resampling.py +%%PYTHON_SITELIBDIR%%/dipy/stats/tests/test_sketching.py %%PYTHON_SITELIBDIR%%/dipy/testing/__init__.py %%PYTHON_SITELIBDIR%%/dipy/testing/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/testing/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc @@ -879,6 +924,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/arrfuncs%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/arrfuncs%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/convert%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/convert%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/deprecator%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/deprecator%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/multiproc%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -894,6 +941,7 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/volume%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/__pycache__/volume%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/arrfuncs.py +%%PYTHON_SITELIBDIR%%/dipy/utils/convert.py %%PYTHON_SITELIBDIR%%/dipy/utils/deprecator.py %%PYTHON_SITELIBDIR%%/dipy/utils/fast_numpy%%PYTHON_EXT_SUFFIX%%.so %%PYTHON_SITELIBDIR%%/dipy/utils/multiproc.py @@ -905,6 +953,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/__init__%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_arrfuncs%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_arrfuncs%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_convert%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_convert%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_deprecator%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_deprecator%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_multiproc%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -922,6 +972,7 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_volume%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/__pycache__/test_volume%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/utils/tests/test_arrfuncs.py +%%PYTHON_SITELIBDIR%%/dipy/utils/tests/test_convert.py %%PYTHON_SITELIBDIR%%/dipy/utils/tests/test_deprecator.py %%PYTHON_SITELIBDIR%%/dipy/utils/tests/test_fast_numpy%%PYTHON_EXT_SUFFIX%%.so %%PYTHON_SITELIBDIR%%/dipy/utils/tests/test_multiproc.py @@ -1058,6 +1109,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/stats%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/tracking%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/tracking%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/utils%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/viz%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/viz%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/__pycache__/workflow%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -1113,6 +1166,8 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_stats%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_tracking%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_tracking%%PYTHON_EXT_SUFFIX%%.pyc +%%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_utils%%PYTHON_EXT_SUFFIX%%.opt-1.pyc +%%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_utils%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_viz%%PYTHON_EXT_SUFFIX%%.opt-1.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_viz%%PYTHON_EXT_SUFFIX%%.pyc %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/__pycache__/test_workflow%%PYTHON_EXT_SUFFIX%%.opt-1.pyc @@ -1136,9 +1191,11 @@ bin/dipy_track_pft %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_segment.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_stats.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_tracking.py +%%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_utils.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_viz.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/test_workflow.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tests/workflow_tests_utils.py %%PYTHON_SITELIBDIR%%/dipy/workflows/tracking.py +%%PYTHON_SITELIBDIR%%/dipy/workflows/utils.py %%PYTHON_SITELIBDIR%%/dipy/workflows/viz.py %%PYTHON_SITELIBDIR%%/dipy/workflows/workflow.py
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