Date: Sun, 17 Dec 2017 00:12:12 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][devel/R-cran-gsubfn] Failed for R-cran-gsubfn-0.6.5_6 in stage Message-ID: <201712170012.vBH0CCC1066420@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: skreuzer@FreeBSD.org Last committer: mat@FreeBSD.org Ident: $FreeBSD: head/devel/R-cran-gsubfn/Makefile 412346 2016-04-01 14:00:51Z mat $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p456453_s326888/logs/R-cran-gsubfn-0.6.5_6.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p456453_s326888 Log: =>> Building devel/R-cran-gsubfn build started at Sun Dec 17 00:09:52 UTC 2017 port directory: /usr/ports/devel/R-cran-gsubfn package name: R-cran-gsubfn-0.6.5_6 building for: FreeBSD head-armv6-default-job-10 12.0-CURRENT FreeBSD 12.0-CURRENT 1200054 arm maintained by: skreuzer@FreeBSD.org Makefile ident: $FreeBSD: head/devel/R-cran-gsubfn/Makefile 412346 2016-04-01 14:00:51Z mat $ Poudriere version: 3.2.3-16-g77e43413 Host OSVERSION: 1200052 Jail OSVERSION: 1200054 Job Id: 10 !!! Jail is newer than host. (Jail: 1200054, Host: 1200052) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200054 UNAME_v=FreeBSD 12.0-CURRENT 1200054 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root P_PYTHON_MAJOR_VER=2 POUDRIERE_VERSION=3.2.3-16-g77e43413 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- skreuzer@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work HOME=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-gsubfn/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/gsubfn OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/gsubfn" EXAMPLESDIR="share/examples/gsubfn" DATADIR="share/gsubfn" WWWDIR="www/gsubfn" ETCDIR="etc/gsubfn" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gsubfn DOCSDIR=/usr/local/share/doc/gsubfn EXAMPLESDIR=/usr/local/share/examples/gsubfn WWWDIR=/usr/local/www/gsubfn ETCDIR=/usr/local/etc/gsubfn --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200054 PYTHONBASE=/usr/local UID=0 _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-gsubfn-0.6.5_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.3_1.txz [head-armv6-default-job-10] Installing pkg-1.10.3_1... [head-armv6-default-job-10] Extracting pkg-1.10.3_1: .......... done ===> R-cran-gsubfn-0.6.5_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-gsubfn-0.6.5_6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-gsubfn-0.6.5_6 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-gsubfn-0.6.5_6 for building => SHA256 Checksum OK for gsubfn_0.6-5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-gsubfn-0.6.5_6 for building ===> Extracting for R-cran-gsubfn-0.6.5_6 => SHA256 Checksum OK for gsubfn_0.6-5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-gsubfn-0.6.5_6 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-gsubfn-0.6.5_6 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.4.3_1.txz [head-armv6-default-job-10] Installing R-3.4.3_1... [head-armv6-default-job-10] `-- Installing cairo-1.14.8_1,2... [head-armv6-default-job-10] | `-- Installing dri2proto-2.8... [head-armv6-default-job-10] | `-- Extracting dri2proto-2.8: .... done <snip> [head-armv6-default-job-10] `-- Extracting gmake-4.2.1_1: .......... done [head-armv6-default-job-10] `-- Installing icu-60.2_1,1... [head-armv6-default-job-10] `-- Extracting icu-60.2_1,1: .......... done [head-armv6-default-job-10] `-- Installing libXScrnSaver-1.2.2_3... [head-armv6-default-job-10] | `-- Installing scrnsaverproto-1.2.2... [head-armv6-default-job-10] | `-- Extracting scrnsaverproto-1.2.2: ... done [head-armv6-default-job-10] `-- Extracting libXScrnSaver-1.2.2_3: .......... done [head-armv6-default-job-10] `-- Installing libXmu-1.1.2_3,1... [head-armv6-default-job-10] | `-- Installing libXt-1.1.5,1... [head-armv6-default-job-10] | `-- Extracting libXt-1.1.5,1: .......... done [head-armv6-default-job-10] `-- Extracting libXmu-1.1.2_3,1: .......... done [head-armv6-default-job-10] `-- Installing pango-1.40.6... [head-armv6-default-job-10] | `-- Installing encodings-1.0.4_3,1... [head-armv6-default-job-10] | | `-- Installing font-util-1.3.1... [head-armv6-default-job-10] | | `-- Extracting font-util-1.3.1: .......... done [head-armv6-default-job-10] | `-- Extracting encodings-1.0.4_3,1: .......... done [head-armv6-default-job-10] | `-- Installing harfbuzz-1.7.2... [head-armv6-default-job-10] | | `-- Installing graphite2-1.3.10... [head-armv6-default-job-10] | | `-- Extracting graphite2-1.3.10: .......... done [head-armv6-default-job-10] | `-- Extracting harfbuzz-1.7.2: .......... done [head-armv6-default-job-10] | `-- Installing libXft-2.3.2_1... [head-armv6-default-job-10] | `-- Extracting libXft-2.3.2_1: ......... done [head-armv6-default-job-10] | `-- Installing xorg-fonts-truetype-7.7_1... [head-armv6-default-job-10] | | `-- Installing dejavu-2.37... [head-armv6-default-job-10] | | `-- Installing mkfontdir-1.0.7... [head-armv6-default-job-10] | | | `-- Installing mkfontscale-1.1.2... [head-armv6-default-job-10] | | | `-- Installing libfontenc-1.1.3_1... [head-armv6-default-job-10] | | | `-- Extracting libfontenc-1.1.3_1: ......... done [head-armv6-default-job-10] | | | `-- Extracting mkfontscale-1.1.2: .. done [head-armv6-default-job-10] | | `-- Extracting mkfontdir-1.0.7: .. done [head-armv6-default-job-10] | | `-- Extracting dejavu-2.37: .......... done [head-armv6-default-job-10] | | `-- Installing font-bh-ttf-1.0.3_3... [head-armv6-default-job-10] | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done [head-armv6-default-job-10] | | `-- Installing font-misc-ethiopic-1.0.3_3... [head-armv6-default-job-10] | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done [head-armv6-default-job-10] | | `-- Installing font-misc-meltho-1.0.3_3... [head-armv6-default-job-10] | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done [head-armv6-default-job-10] `-- Extracting pango-1.40.6: .......... done [head-armv6-default-job-10] Extracting R-3.4.3_1: .......... done Message from freetype2-2.8_1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from perl5-5.24.3: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.14_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.34.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc6-6.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-gsubfn-0.6.5_6 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-gsubfn-0.6.5_6 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-gsubfn-0.6.5_6 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-gsubfn-0.6.5_6 depends on package: R-cran-proto>=0.3.9.2_6 - not found ===> Installing existing package /packages/All/R-cran-proto-1.0.0.txz [head-armv6-default-job-10] Installing R-cran-proto-1.0.0... [head-armv6-default-job-10] Extracting R-cran-proto-1.0.0: .......... done ===> R-cran-gsubfn-0.6.5_6 depends on package: R-cran-proto>=0.3.9.2_6 - found ===> Returning to build of R-cran-gsubfn-0.6.5_6 ===> R-cran-gsubfn-0.6.5_6 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-gsubfn-0.6.5_6 ===> Generating temporary packing list * installing *source* package 'gsubfn' ... ** package 'gsubfn' successfully unpacked and MD5 sums checked ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Warning: S3 methods 'as.character.tclObj', 'as.character.tclVar', 'as.double.tclObj', 'as.integer.tclObj', 'as.logical.tclObj', 'as.raw.tclObj', 'print.tclObj', '[[.tclArray', '[[<-.tclArray', '$.tclArray', '$<-.tclArray', 'names.tclArray', 'names<-.tclArray', 'length.tclArray', 'length<-.tclArray', 'tclObj.tclVar', 'tclObj<-.tclVar', 'tclvalue.default', 'tclvalue.tclObj', 'tclvalue.tclVar', 'tclvalue<-.default', 'tclvalue<-.tclVar', 'close.tkProgressBar' were declared in NAMESPACE but not found Error : package or namespace load failed for 'tcltk': .onLoad failed in loadNamespace() for 'tcltk', details: call: fun(libname, pkgname) error: Tcl/Tk support is not available on this system Error : unable to load R code in package 'gsubfn' ERROR: lazy loading failed for package 'gsubfn' * removing '/wrkdirs/usr/ports/devel/R-cran-gsubfn/work/stage/usr/local/lib/R/library/gsubfn' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-gsubfn
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