From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Sep 14 18:10:01 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 176B7106568D for ; Mon, 14 Sep 2009 18:10:01 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id EA1008FC1B for ; Mon, 14 Sep 2009 18:10:00 +0000 (UTC) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n8EIA0rG096486 for ; Mon, 14 Sep 2009 18:10:00 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n8EIA00L096485; Mon, 14 Sep 2009 18:10:00 GMT (envelope-from gnats) Resent-Date: Mon, 14 Sep 2009 18:10:00 GMT Resent-Message-Id: <200909141810.n8EIA00L096485@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, KATO Tsuguru Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 58F5C106566B for ; Mon, 14 Sep 2009 18:00:58 +0000 (UTC) (envelope-from tkato432@yahoo.com) Received: from msa104lp.auone-net.jp (msa104lp.auone-net.jp [222.3.140.167]) by mx1.freebsd.org (Postfix) with ESMTP id 11B1B8FC16 for ; Mon, 14 Sep 2009 18:00:57 +0000 (UTC) Received: from localhost.localdomain (ZT037005.ppp.dion.ne.jp [59.128.37.5]) by msa104lp.auone-net.jp (au one net msa) with ESMTP id 0D77F2BC031 for ; Tue, 15 Sep 2009 03:00:53 +0900 (JST) Message-Id: <20090915030018.7330364c.tkato432@yahoo.com> Date: Tue, 15 Sep 2009 03:00:18 +0900 From: KATO Tsuguru To: FreeBSD-gnats-submit@FreeBSD.org Cc: Subject: ports/138813: Update port: biology/phylip to 3.69 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 14 Sep 2009 18:10:01 -0000 >Number: 138813 >Category: ports >Synopsis: Update port: biology/phylip to 3.69 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Mon Sep 14 18:10:00 UTC 2009 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 7.2-RELEASE-p2 i386 >Organization: >Environment: >Description: - Update to version 3.69 >How-To-Repeat: >Fix: diff -urN /usr/ports/biology/phylip/Makefile biology/phylip/Makefile --- /usr/ports/biology/phylip/Makefile 2009-01-24 03:13:45.000000000 +0900 +++ biology/phylip/Makefile 2009-09-15 02:00:38.000000000 +0900 @@ -6,27 +6,23 @@ # PORTNAME= phylip -PORTVERSION= 3.68 -PORTREVISION= 1 +PORTVERSION= 3.69 PORTEPOCH= 1 CATEGORIES= biology -MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/phylip/ \ - http://bioinformatics.weizmann.ac.il/software/linkage_and_mapping/phylip/ \ - ${MASTER_SITE_GENTOO} -MASTER_SITE_SUBDIR= distfiles +MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/ MAINTAINER= ports@FreeBSD.org COMMENT= A Phylogeny Inference Package BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash +BUILD_WRKSRC= ${WRKSRC}/src +INSTALL_WRKSRC= ${WRKSRC}/src + USE_XORG= x11 xaw xt USE_GMAKE= yes -BUILD_WRKSRC= ${WRKSRC}/src -INSTALL_WRKSRC= ${BUILD_WRKSRC} -CFLAGS+= -I${LOCALBASE}/include -MAKE_ARGS= CC="${CC} ${CFLAGS}" \ - DC="${CC} -DX ${CFLAGS}" \ +MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" \ + DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \ DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm" PORTDOCS= * diff -urN /usr/ports/biology/phylip/distinfo biology/phylip/distinfo --- /usr/ports/biology/phylip/distinfo 2008-08-28 00:51:34.000000000 +0900 +++ biology/phylip/distinfo 2009-09-15 01:56:04.000000000 +0900 @@ -1,3 +1,3 @@ -MD5 (phylip-3.68.tar.gz) = 75c002e108463845376a2fcd443d91da -SHA256 (phylip-3.68.tar.gz) = 30e4eaae0eff1d88a479af1ff5c8a9ef8167c86b83c1536327cd9d05ce941531 -SIZE (phylip-3.68.tar.gz) = 1473441 +MD5 (phylip-3.69.tar.gz) = 7ad50618173efc2a471d93bfca22042c +SHA256 (phylip-3.69.tar.gz) = 27947ce8dab4416e4823db38b3d1b0bf17bc545b6907cf09dcf6177df94c1a8f +SIZE (phylip-3.69.tar.gz) = 1511935 >Release-Note: >Audit-Trail: >Unformatted: