From owner-freebsd-ports@FreeBSD.ORG Fri Jan 4 23:25:36 2008 Return-Path: Delivered-To: freebsd-ports@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 4E60E16A47C for ; Fri, 4 Jan 2008 23:25:36 +0000 (UTC) (envelope-from dikshie@gmail.com) Received: from py-out-1112.google.com (py-out-1112.google.com [64.233.166.177]) by mx1.freebsd.org (Postfix) with ESMTP id C39A713C465 for ; Fri, 4 Jan 2008 23:25:35 +0000 (UTC) (envelope-from dikshie@gmail.com) Received: by py-out-1112.google.com with SMTP id u52so11356497pyb.10 for ; Fri, 04 Jan 2008 15:25:35 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:received:received:message-id:date:from:to:subject:mime-version:content-type:content-transfer-encoding:content-disposition; bh=c7AZBLTY9i+RnV2QQTUM66zIRynoMORj5AR2orp/Pes=; b=G/W2Gw2jwMaIylIwESaetOJHvFqMlhh3Tmhe8UANOgNlVChLvxgSe6vE5Mm7KNHzOBtfOErqMa2cMAubweFT8t1SP0bYYt86JNf4hp7EvZ9rTDuGlUCjneHxIWvOefjTrybXtNjZS7NaFvjwhgsv70PCe+oCMZVh9S4ySnOhyjg= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=message-id:date:from:to:subject:mime-version:content-type:content-transfer-encoding:content-disposition; b=O6JvWnZhS/9OTS9UqjiKqOmHWr1s1YehVOrpzvbCItJbFFMnG4RWA2dvU6t0kOYl2lHEPX/CXE6MHp/Vvi5GQJAHUldTc26quZwgR+Xf8dcArgu/1DncTLwFClTqS7Dut/NWw58MiNIXrmE2F2MSgK23pYamKwO2+1fGSzEokMQ= Received: by 10.142.221.19 with SMTP id t19mr1859463wfg.4.1199487630485; Fri, 04 Jan 2008 15:00:30 -0800 (PST) Received: by 10.142.84.20 with HTTP; Fri, 4 Jan 2008 15:00:30 -0800 (PST) Message-ID: <910e60e80801041500x5295cde3sfa48e87f977baf48@mail.gmail.com> Date: Sat, 5 Jan 2008 08:00:30 +0900 From: dikshie To: freebsd-ports@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit Content-Disposition: inline Subject: update R from 2.2.0 to 2.6.0 always fail X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 04 Jan 2008 23:25:36 -0000 i try several times to update math/R from 2.2.0 to 2.6.0 but always fail in this step: gfortran42 -fpic -g -O2 -c xxxpr.f -o xxxpr.o cc -std=gnu99 -shared -L/usr/local/lib -o libR.so CConverters.o CommandLineArgs .o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base .o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o contex t.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o d struct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents .o gram.o gram-ex.o graphics.o identical.o inlined.o internet.o iosupport.o lapa ck.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o nam es.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot .o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o r andom.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o seriali ze.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../ appl/*.o ../nmath/*.o ../unix/*.o 2>/dev/null|grep -v /ext-` -lblas -L/usr/loca l/lib/gcc-4.2.3/gcc/i386-portbld-freebsd7.0/4.2.3 -L/usr/local/lib/gcc-4.2.3 -lg fortran -lm -lgcc_s /usr/local/lib/libintl.so /usr/local/lib/libiconv.so - Wl,-rpath -Wl,/usr/local/lib -lreadline -lpcre -lbz2 -lz -lm -liconv mkdir /usr/ports/math/R/work/R-2.6.0/bin/exec mkdir /usr/ports/math/R/work/R-2.6.0/lib cc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/incl ude -DHAVE_CONFIG_H -fpic -O2 -fno-strict-aliasing -pipe -c Rmain.c -o Rmain.o cc -std=gnu99 -export-dynamic -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR Rmain.o(.text+0x5b): In function `main': : undefined reference to `R_running_as_main_program' *** Error code 1 Stop in /usr/ports/math/R/work/R-2.6.0/src/main. *** Error code 1 Stop in /usr/ports/math/R/work/R-2.6.0/src/main. *** Error code 1 Stop in /usr/ports/math/R/work/R-2.6.0/src. *** Error code 1 Stop in /usr/ports/math/R/work/R-2.6.0. *** Error code 1 Stop in /usr/ports/math/R. *** Error code 1 Stop in /usr/ports/math/R. ** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade.23978.0 en v UPGRADE_TOOL=portupgrade UPGRADE_PORT=R-2.2.1 UPGRADE_PORT_VER=2.2.1 make ** Fix the problem and try again. ** Listing the failed packages (*:skipped / !:failed) ! math/R (R-2.2.1) (linker error) ---> Packages processed: 0 done, 0 ignored, 0 skipped and 1 failed any hints ? regards, -- -dikshie-