From owner-svn-ports-head@freebsd.org Thu Aug 2 19:27:14 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 5EC7B104CF90; Thu, 2 Aug 2018 19:27:14 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 0971077CC6; Thu, 2 Aug 2018 19:27:14 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id DDFC215FA8; Thu, 2 Aug 2018 19:27:13 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id w72JRDnY086766; Thu, 2 Aug 2018 19:27:13 GMT (envelope-from fernape@FreeBSD.org) Received: (from fernape@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id w72JRDpO086764; Thu, 2 Aug 2018 19:27:13 GMT (envelope-from fernape@FreeBSD.org) Message-Id: <201808021927.w72JRDpO086764@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: fernape set sender to fernape@FreeBSD.org using -f From: =?UTF-8?Q?Fernando_Apestegu=c3=ada?= Date: Thu, 2 Aug 2018 19:27:13 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r476245 - head/biology/htslib X-SVN-Group: ports-head X-SVN-Commit-Author: fernape X-SVN-Commit-Paths: head/biology/htslib X-SVN-Commit-Revision: 476245 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 02 Aug 2018 19:27:14 -0000 Author: fernape Date: Thu Aug 2 19:27:13 2018 New Revision: 476245 URL: https://svnweb.freebsd.org/changeset/ports/476245 Log: biology/htslib: update to 1.9 PR: 230170 Submitted by: ndowens.fbsd@yandex.com Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D16568 Modified: head/biology/htslib/Makefile head/biology/htslib/distinfo Modified: head/biology/htslib/Makefile ============================================================================== --- head/biology/htslib/Makefile Thu Aug 2 18:48:22 2018 (r476244) +++ head/biology/htslib/Makefile Thu Aug 2 19:27:13 2018 (r476245) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= htslib -DISTVERSION= 1.8 +DISTVERSION= 1.9 CATEGORIES= biology devel MAINTAINER= cartwright@asu.edu @@ -14,14 +14,16 @@ LICENSE_FILE= ${WRKSRC}/LICENSE TEST_DEPENDS= bash:shells/bash -USES= autoreconf gmake localbase pathfix perl5 shebangfix +USES= autoreconf gmake localbase \ + pathfix perl5 shebangfix USE_GITHUB= yes GH_ACCOUNT= samtools USE_PERL5= test USE_LDCONFIG= yes GNU_CONFIGURE= yes PATHFIX_MAKEFILEIN= Makefile -SHEBANG_FILES= test/compare_sam.pl test/test.pl +SHEBANG_FILES= test/compare_sam.pl \ + test/test.pl OPTIONS_DEFINE= CURL OPTIONS_DEFAULT= CURL Modified: head/biology/htslib/distinfo ============================================================================== --- head/biology/htslib/distinfo Thu Aug 2 18:48:22 2018 (r476244) +++ head/biology/htslib/distinfo Thu Aug 2 19:27:13 2018 (r476245) @@ -1,3 +1,3 @@ -TIMESTAMP = 1528766078 -SHA256 (samtools-htslib-1.8_GH0.tar.gz) = ad52105c0f9ce6474c8f5d2f208b8e71982436ee1ca5225162932b08aff48b23 -SIZE (samtools-htslib-1.8_GH0.tar.gz) = 1262465 +TIMESTAMP = 1532906408 +SHA256 (samtools-htslib-1.9_GH0.tar.gz) = d2e3cde77b8f874b37453c63390cd992901266336e9f70e871ef42402510467f +SIZE (samtools-htslib-1.9_GH0.tar.gz) = 1285580