Date: Sun, 27 Nov 2005 12:39:14 -0800 From: "Michael C. Shultz" <ringworm01@gmail.com> To: Mark Kane <mark@mkproductions.org> Cc: freebsd-questions@freebsd.org Subject: Re: After upgrading Perl, cannot reinstall modules - Cwd.so: Undefined symbol "perl_get_sv Message-ID: <200511271239.15344.ringworm01@gmail.com> In-Reply-To: <438A1A2A.1010907@mkproductions.org> References: <43890854.8060901@mkproductions.org> <200511271224.53063.ringworm01@gmail.com> <438A1A2A.1010907@mkproductions.org>
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On Sunday 27 November 2005 12:42, Mark Kane wrote: > Michael C. Shultz wrote: > > On Sunday 27 November 2005 12:29, Mark Kane wrote: > >>Michael C. Shultz wrote: > >>>On Saturday 26 November 2005 22:20, Mark Kane wrote: > >>>>Michael C. Shultz wrote: > >>>>>On Saturday 26 November 2005 19:25, Michael C. Shultz wrote: > >>>>>>On Saturday 26 November 2005 18:48, Mark Kane wrote: > >>>>>>>Michael C. Shultz wrote: > >>>>>>>>On Saturday 26 November 2005 17:13, Mark Kane wrote: > >>>>>>>>>Hi everyone. I finally did a big portupgrade on a 4.9-RELEASE > >>>>>>>>> system today and I'm having some problems with Perl. > >>>>>>>>> > >>>>>>>>>I got it updated to 5.8.7 (was 5.6.x before), ran "use.perl port= ", > >>>>>>>>>and ran the perl-after-upgrade script which were all said in > >>>>>>>>>UPDATING. Now it's time to force upgrade/recompile the Perl > >>>>>>>>> modules for the new version. > >>>>>>>>> > >>>>>>>>>Unfortunately this is where I get stuck: > >>>>>>>>> > >>>>>>>>>xeon1# portupgrade -f p5-\* > >>>>>>>>> > >>>>>>>>>[snip] > >>>>>>>>> > >>>>>>>>>=3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: > >>>>>>>>> /usr/local/bin/perl5.8.7 - found =3D=3D=3D> p5-HTML-Tagset-3.= 10 > >>>>>>>>> depends on file: > >>>>>>>>>/usr/local/bin/perl5.8.7 - found =3D=3D=3D> Configuring for > >>>>>>>>>p5-HTML-Tagset-3.10 > >>>>>>>>>/usr/libexec/ld-elf.so.1: > >>>>>>>>>/usr/local/lib/perl5/5.8.7/mach/auto/Cwd/Cwd.so: Undefined symbol > >>>>>>>>>"perl_get_sv" > >>>>>>>>>*** Error code 1 > >>>>>>>>>------------------------------------ > >>>>>>>>> > >>>>>>>>>The remaining Perl modules that are supposed to be > >>>>>>>>>upgraded/recompiled either error out with the same message or are > >>>>>>>>>skipped because one that it requires errored out. > >>>>>>>>> > >>>>>>>>>I tried Googling for that error, but nothing came up. Other info > >>>>>>>>>that might be useful: > >>>>>>>>> > >>>>>>>>>xeon1# pkg_which /usr/local/lib/perl5/5.8.7/mach/auto/Cwd/Cwd.so > >>>>>>>>>perl-5.8.7 > >>>>>>>>>----- > >>>>>>>>>xeon1# pkg_info | grep p5 > >>>>>>>>>p5-Authen-SASL-2.04 Perl5 module for SASL authentication > >>>>>>>>>p5-Compress-Zlib-1.41 Perl5 interface to zlib compression library > >>>>>>>>>p5-DBD-mysql-2.1026_1 MySQL driver for the Perl5 Database > >>>>>>>>> Interface (DBI) p5-DBI-1.38 The perl5 Database Interfac= e. > >>>>>>>>> Required for DBD::* modules > >>>>>>>>>p5-Digest-1.13 Modules that calculate message digests > >>>>>>>>>p5-Digest-MD5-2.27 Perl5 interface to the MD5 algorithm > >>>>>>>>>p5-HTML-Parser-3.31 Perl5 module for parse HTML tag > >>>>>>>>>p5-HTML-Tagset-3.03 Some useful data table in parsing HTML > >>>>>>>>>p5-MIME-Base64-2.20 Perl5 module for Base64 and Quoted-Printable > >>>>>>>>>encodings p5-Net-1.16,1 Perl5 modules to access and use > >>>>>>>>>network protocols p5-URI-1.25 Perl5 interface to Uniform > >>>>>>>>>Resource Identifier (URI) refere > >>>>>>>>>p5-libvorbis-0.04 Perl extension for Ogg Vorbis streams > >>>>>>>>>p5-libwww-5.69 Perl5 library for WWW access > >>>>>>>>>----- > >>>>>>>>> > >>>>>>>>>Thanks very much in advance as this is a production server which > >>>>>>>>>uses Perl all the time. > >>>>>>>>> > >>>>>>>>>-Mark > >>>>>>>>>FreeBSD 4.9-RELEASE i386 > >>>>>>>> > >>>>>>>>On a 4.11 system sysutils/portmanager has no problem with perl5.8 > >>>>>>>> and www/p5-HTML-Tagset, just tested it, not sure if it will run = on > >>>>>>>> 4.9 but you you may want to give it a try. > >>>>>>>> > >>>>>>>>-Mike > >>>>>>> > >>>>>>>Thanks for the reply. I have never used portmanager, but I did give > >>>>>>> it a try like you said. Unfortunately it produced the same error > >>>>>>> when building that portupgrade did. I should also point out that I > >>>>>>> did try just a "make" from the port directory to see if it had > >>>>>>> something to do with portupgrade, and that failed with the same > >>>>>>> message about "perl_get_sv" as well. > >>>>>>> > >>>>>>>Here is the output from portmanager. I have omitted other errors > >>>>>>> that were about other Perl modules that were not installed via > >>>>>>> ports at all. > >>>>>>> > >>>>>>>xeon1# portmanager www/p5-HTML-Tagset > >>>>>>> > >>>>>>>[snip] > >>>>>>> > >>>>>>>-------------------- > >>>>>>>update p5-HTML-Tagset-3.10 > >>>>>>>MGPMrUpdate 0.3.9_2 localProperty.command: #9 of 14 cd > >>>>>>>/usr/ports/www/p5-HTML-Tagset; make > >>>>>>>------------------------------------------------------------------= =2D- > >>>>>>>-- -- =3D=3D=3D> Vulnerability check disabled, database not found > >>>>>>>=3D=3D=3D> Extracting for p5-HTML-Tagset-3.10 > >>>>>>>=3D> MD5 Checksum OK for HTML-Tagset-3.10.tar.gz. > >>>>>>>=3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/p= erl5.8.7 > >>>>>>> - found =3D=3D=3D> Patching for p5-HTML-Tagset-3.10 > >>>>>>>=3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/p= erl5.8.7 > >>>>>>> - found =3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: > >>>>>>>/usr/local/bin/perl5.8.7 - found =3D=3D=3D> Configuring for > >>>>>>>p5-HTML-Tagset-3.10 > >>>>>>>/usr/libexec/ld-elf.so.1: > >>>>>>>/usr/local/lib/perl5/5.8.7/mach/auto/Cwd/Cwd.so: Undefined symbol > >>>>>>>"perl_get_sv" > >>>>>>>*** Error code 1 > >>>>>>> > >>>>>>>Stop in /usr/ports/www/p5-HTML-Tagset. > >>>>>>>MGPMrUpdate 0.3.9_2 error: make returned an error, adding > >>>>>>>/www/p5-HTML-Tagset to ignore.db > >>>>>>>reverting bsd.port.mk patch -=3D>cd /usr/ports/Mk; patch -R < > >>>>>>>/usr/local/share/portmanager/patch-bsd.port.mk-0.3.6; > >>>>>>>Hmm... Looks like a unified diff to me... > >>>>>>>The text leading up to this was: > >>>>>>>-------------------------- > >>>>>>> > >>>>>>>|--- /usr/ports/Mk/bsd.port.mk Tue Nov 8 01:02:51 2005 > >>>>>>>|+++ bsd.port.mk Wed Nov 16 02:16:57 2005 > >>>>>>> > >>>>>>>-------------------------- > >>>>>>>Patching file bsd.port.mk using Plan A... > >>>>>>>Hunk #1 succeeded at 2049. > >>>>>>>done > >>>>>>>rCreateInstalledDbVerifyContentsFile 0.3.9_2 error: "@comment > >>>>>>> ORIGIN:" not found in /var/db/pkg/bsdpan-XML-Parser-2.34/+CONTENTS > >>>>>>> bsdpan-XML-Parser-2.34 installation is corrupt! > >>>>>>> recomend running "pkg_delete -f > >>>>>>> bsdpan-XML-Parser-2.34" then manually reinstalling this port > >>>>>>>-------------------- > >>>>>>> > >>>>>>>Thanks > >>>>>>> > >>>>>>>-Mark > >>>>>> > >>>>>>I dug a little and think have figured the problem but not positive.= =20 > >>>>>> I think your running perl configure from the original perl and not > >>>>>> the one > >>>>>> > >>>>>> > >>>>>>from ports. > >>>>>> > >>>>>>Assuming you use csh as your shell try in .cshrc to change the order > >>>>>> of the path staement so it looks at /usr /local directories first. > >>>>>> > >>>>>>from: > >>>>>> > >>>>>>set path =3D > >>>>>>(/sbin /bin /usr/sbin /usr/bin /usr/games /usr/local/sbin > >>>>>>/usr/local/bin /usr/X11R6/bin $HOME/bin /home/mike/SCRIPTS /root/bin > >>>>>> ) > >>>>>> > >>>>>>to > >>>>>> > >>>>>>set path =3D > >>>>>>( /usr/local/sbin /usr/local/bin /sbin /bin /usr/sbin /usr/bin > >>>>>>/usr/games /usr/X11R6/bin $HOME/bin /home/mike/SCRIPTS /root/bin ) > >>>>>> > >>>>>> > >>>>>>-Mike > >>>>> > >>>>>I am nearly certain your using /usr/bin/perl > >>>>>instead of /usr/local/bin/perl, here is how to test: > >>>>> > >>>>>cd > >>>>>/usr/ports/www/p5-HTML-Tagset/work/HTML-Tagset-3.10 > >>>>> > >>>>>try > >>>>>perl Makefile.PL > >>>>>and I bet you get the error > >>>>>and if you try: > >>>>> > >>>>>/usr/local/bin/perl Makefile.PL > >>>>> > >>>>>I bet it works ok..... > >>>> > >>>>Thanks for your replies. Your explanation makes sense about the > >>>> /usr/bin vs /usr/local/bin, however if I do: /usr/bin/perl --version, > >>>> I get: > >>>> > >>>>This is perl, v5.8.7 built for i386-freebsd-64int > >>>>(with 1 registered patch, see perl -V for more detail) > >>>> > >>>>If I do: /usr/local/bin/perl --version, I get: > >>>> > >>>>This is perl, v5.8.7 built for i386-freebsd-64int > >>>>(with 1 registered patch, see perl -V for more detail) > >>>> > >>>>Looks like /usr/bin/perl is a link to another file: > >>>> > >>>>xeon1# ls -l /usr/bin/perl > >>>>lrwxr-xr-x 1 root wheel 24 Nov 26 18:32 /usr/bin/perl -> > >>>>/usr/local/bin/perl5.8.7 > >>>> > >>>>Finally, I tried what you said anyway: > >>>> > >>>>xeon1# perl Makefile.PL > >>>>/usr/libexec/ld-elf.so.1: > >>>>/usr/local/lib/perl5/5.8.7/mach/auto/Cwd/Cwd.so: Undefined symbol > >>>>"perl_get_sv" > >>>>xeon1# /usr/local/bin/perl Makefile.PL > >>>>/usr/libexec/ld-elf.so.1: > >>>>/usr/local/lib/perl5/5.8.7/mach/auto/Cwd/Cwd.so: Undefined symbol > >>>>"perl_get_sv" > >>>> > >>>>Thanks. > >>>> > >>>>-Mark > >>> > >>>Beats me what is wrong then. This is from running: perldoc > >>>perl58delta.pod > >>> > >>> Perl_get_sv > >>> > >>> You may get errors like =E2=80=99Undefined symbol "Perl_get_sv"= =E2=80=99 or > >>> "can=E2=80=99t resolve symbol =E2=80=99Perl_get_sv=E2=80=99", or the = symbol may be > >>> "Perl_sv_2pv". This probably means that you are trying to use an older > >>> shared Perl library (or extensions linked with such) with Perl 5.8.0 > >>> executable. Perl used to have such a subroutine, but that is no more > >>> the case. Check your shared library path, and any shared Perl librari= es > >>> in those directories. > >>> > >>> Sometimes this problem may also indicate a partial Perl 5.8.0 > >>>installa=E2=80=90 tion, see "Mac OS X dyld undefined symbols" for an e= xample and > >>>how to deal with it. > >>> > >>> > >>>-Mike > >> > >>Well I tried to find some more info and ended up doing a force reinstall > >>of perl. I also ran "use.perl port" and perl-after-upgrade again (which > >>didn't show anything as moved or needed to be done so I did not continue > >>with -f). > >> > >>Now there is a different error when trying to force upgrade/recompile > >>the perl modules: > >> > >>=3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/perl5.= 8.7 - > >>found =3D=3D=3D> Configuring for p5-HTML-Tagset-3.10 > >>Checking if your kit is complete... > >>Segmentation fault (core dumped) > >>*** Error code 139 > >> > >>Stop in /usr/ports/www/p5-HTML-Tagset. > >> > >>Any ideas? Again, this is a live production server that heavily relies > >>on Perl. > >> > >>Thanks. > >> > >>-Mark > > > > I need to see more context, are you manually trying to install > > p5-HTML-Tagset or are you using portupgrade/portmanager for example. > > > > -Mike > > I am doing as /usr/ports/UPDATING says to upgrade/reinstall all the Perl > modules, which is to do: > > portupgrade -f p5-\* > > p5-HTML-Tagset is just the first one that it tries, and it produces this: > > ---> Upgrading 'p5-HTML-Tagset-3.03' to 'p5-HTML-Tagset-3.10' > (www/p5-HTML-Tagset) > ---> Building '/usr/ports/www/p5-HTML-Tagset' > =3D=3D=3D> Cleaning for perl-5.8.7 > =3D=3D=3D> Cleaning for p5-HTML-Tagset-3.10 > =3D=3D=3D> Vulnerability check disabled, database not found > =3D=3D=3D> Extracting for p5-HTML-Tagset-3.10 > =3D> MD5 Checksum OK for HTML-Tagset-3.10.tar.gz. > =3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/perl5.8.= 7 - > found =3D=3D=3D> Patching for p5-HTML-Tagset-3.10 > =3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/perl5.8.= 7 - > found =3D=3D=3D> p5-HTML-Tagset-3.10 depends on file: /usr/local/bin/pe= rl5.8.7 > - found =3D=3D=3D> Configuring for p5-HTML-Tagset-3.10 > Checking if your kit is complete... > Segmentation fault (core dumped) > *** Error code 139 > > Stop in /usr/ports/www/p5-HTML-Tagset. > ** Command failed [exit code 1]: /usr/bin/script -qa > /tmp/portupgrade52316.0 make > ** Fix the problem and try again. > -------------------- > > It attempts the other Perl modules as well but fails with the same. Here > is the final report: > > -------------------- > ** Listing the failed packages (*:skipped / !:failed) > ! www/p5-HTML-Tagset (p5-HTML-Tagset-3.03) (coredump) > ! converters/p5-MIME-Base64 (p5-MIME-Base64-2.20) (coredump) > * security/p5-Digest (p5-Digest-1.13) > ! security/p5-Authen-SASL (p5-Authen-SASL-2.04) (coredump) > ! databases/p5-DBI (p5-DBI-1.38) (coredump) > ! audio/p5-libvorbis (p5-libvorbis-0.04) (coredump) > * net/p5-URI (p5-URI-1.25) > * net/p5-Net (p5-Net-1.16,1) > * www/p5-HTML-Parser (p5-HTML-Parser-3.31) > * databases/p5-DBD-mysql (p5-DBD-mysql-2.1026_1) > ! security/p5-Digest-MD5 (p5-Digest-MD5-2.27) (coredump) > ! archivers/p5-Compress-Zlib (p5-Compress-Zlib-1.41) (coredump) > * www/p5-libwww (p5-libwww-5.69) > ---> Packages processed: 0 done, 0 ignored, 6 skipped and 7 failed > -------------------- > > Thanks > > -Mark Are you getting a portupgrade.core? Looks like that is what is coredumping= ,=20 If so try manually upgrading one or two of these and see what happens. =2DMike
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