From owner-svn-ports-head@freebsd.org Fri Jul 10 09:45:49 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id DC0093650F7; Fri, 10 Jul 2020 09:45:49 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4B37T95QXqz4PdZ; Fri, 10 Jul 2020 09:45:49 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 99DE51FA7F; Fri, 10 Jul 2020 09:45:49 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 06A9jnXw025308; Fri, 10 Jul 2020 09:45:49 GMT (envelope-from fernape@FreeBSD.org) Received: (from fernape@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 06A9jnrH025307; Fri, 10 Jul 2020 09:45:49 GMT (envelope-from fernape@FreeBSD.org) Message-Id: <202007100945.06A9jnrH025307@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: fernape set sender to fernape@FreeBSD.org using -f From: =?UTF-8?Q?Fernando_Apestegu=c3=ada?= Date: Fri, 10 Jul 2020 09:45:49 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r541852 - head/biology/phyml X-SVN-Group: ports-head X-SVN-Commit-Author: fernape X-SVN-Commit-Paths: head/biology/phyml X-SVN-Commit-Revision: 541852 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 10 Jul 2020 09:45:49 -0000 Author: fernape Date: Fri Jul 10 09:45:48 2020 New Revision: 541852 URL: https://svnweb.freebsd.org/changeset/ports/541852 Log: biology/phyml: update to 3.3.20200621 From ChangeLog: https://github.com/stephaneguindon/phyml/releases/tag/v3.3.20200621 This release fixes a few minor bugs (see recent commits). The manual also gives extra XML configuration information in order to apply fancy substitution models (e.g., CAT-like) on single- or multiple-gene data sets Reported by: portscout Modified: head/biology/phyml/Makefile head/biology/phyml/distinfo Modified: head/biology/phyml/Makefile ============================================================================== --- head/biology/phyml/Makefile Fri Jul 10 09:42:07 2020 (r541851) +++ head/biology/phyml/Makefile Fri Jul 10 09:45:48 2020 (r541852) @@ -3,8 +3,7 @@ PORTNAME= phyml DISTVERSIONPREFIX= v -DISTVERSION= 3.3.20190909 -PORTREVISION= 3 +DISTVERSION= 3.3.20200621 PORTEPOCH= 1 CATEGORIES= biology @@ -22,9 +21,9 @@ GH_ACCOUNT= stephaneguindon GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-beagle --disable-native +PLIST_FILES= bin/phyml${BIN_SUFFIX} PORTDOCS= * PORTEXAMPLES= * -PLIST_FILES= bin/phyml${BIN_SUFFIX} OPTIONS_DEFINE= DOCS EXAMPLES OPTIONS_RADIO= MPI Modified: head/biology/phyml/distinfo ============================================================================== --- head/biology/phyml/distinfo Fri Jul 10 09:42:07 2020 (r541851) +++ head/biology/phyml/distinfo Fri Jul 10 09:45:48 2020 (r541852) @@ -1,3 +1,3 @@ -TIMESTAMP = 1568127899 -SHA256 (stephaneguindon-phyml-v3.3.20190909_GH0.tar.gz) = f3afd6d5332cd98298736b3c6df63d751fa74388a0e972ec08f63a032d5e6a9c -SIZE (stephaneguindon-phyml-v3.3.20190909_GH0.tar.gz) = 2237651 +TIMESTAMP = 1594372740 +SHA256 (stephaneguindon-phyml-v3.3.20200621_GH0.tar.gz) = ffbecbc716fe7dd3e25493d2ebc1aab42ff3c33fc6fffca0920a950d38d74e22 +SIZE (stephaneguindon-phyml-v3.3.20200621_GH0.tar.gz) = 2234125