Date: Mon, 6 May 2019 08:51:31 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/py-GPy] Failed for py27-GPy-1.9.6 in build Message-ID: <201905060851.x468pVNK097843@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: head/science/py-GPy/Makefile 498038 2019-04-05 23:27:57Z amdmi3 $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p500844_s347134/logs/py27-GPy-1.9.6.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p500844_s347134 Log: =>> Building science/py-GPy build started at Mon May 6 08:51:04 UTC 2019 port directory: /usr/ports/science/py-GPy package name: py27-GPy-1.9.6 building for: FreeBSD head-amd64-default-job-08 13.0-CURRENT FreeBSD 13.0-CURRENT 1300022 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/py-GPy/Makefile 498038 2019-04-05 23:27:57Z amdmi3 $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300018 Jail OSVERSION: 1300022 Job Id: 08 !!! Jail is newer than host. (Jail: 1300022, Host: 1300018) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300022 UNAME_v=FreeBSD 13.0-CURRENT 1300022 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-GPy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 HOME=/wrkdirs/usr/ports/science/py-GPy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-GPy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA ="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/GPy" EXAMPLESDIR="share/examples/GPy" DATADIR="share/GPy" WWWDIR="www/GPy" ETCDIR="etc/GPy" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/GPy DOCSDIR=/usr/local/share/doc/GPy EXAMPLESDIR=/usr/local/share/examples/GPy WWWDIR=/usr/local/www/GPy ETCDIR=/usr/local/etc/GPy --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300022 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-GPy-1.9.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-amd64-default-job-08] Installing pkg-1.10.5_5... [head-amd64-default-job-08] Extracting pkg-1.10.5_5: .......... done ===> py27-GPy-1.9.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-GPy-1.9.6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-GPy-1.9.6 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-GPy-1.9.6 for building => SHA256 Checksum OK for GPy-1.9.6.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-GPy-1.9.6 for building ===> Extracting for py27-GPy-1.9.6 => SHA256 Checksum OK for GPy-1.9.6.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py27-GPy-1.9.6 =========================================================================== =======================<phase: build-depends >============================ ===> py27-GPy-1.9.6 depends on package: py27-numpy>0 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.1_2,1.txz [head-amd64-default-job-08] Installing py27-numpy-1.16.1_2,1... [head-amd64-default-job-08] `-- Installing blas-3.5.0_5... <snip> copying GPy/inference/latent_function_inference/exact_studentt_inference.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/expectation_propagation.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/dtc.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/fitc.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/var_gauss.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/svgp.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/pep.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/var_dtc_parallel.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/vardtc_svi_multiout_miss.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/var_dtc.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/vardtc_svi_multiout.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/inferenceX.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/vardtc_md.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/exact_gaussian_inference.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/posterior.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/laplace.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference copying GPy/inference/latent_function_inference/gaussian_grid_inference.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/inference/latent_function_inference creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/bernoulli.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/poisson.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/multioutput_likelihood.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/exponential.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/student_t.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/gamma.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/gaussian.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/loggaussian.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/binomial.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/loglogistic.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/mixed_noise.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/likelihood.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/link_functions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods copying GPy/likelihoods/weibull.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/likelihoods creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/additive.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/compound.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/kernel.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/identity.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/mlpext.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/constant.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/linear.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/piecewise_linear.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings copying GPy/mappings/mlp.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/mappings creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/classification.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/non_gaussian.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/dimensionality_reduction.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/regression.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples copying GPy/examples/state_space.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/examples creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/model_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/rv_transformation_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/gp_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/fitc.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/prior_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/util_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/quadrature_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/pickle_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/kernel_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/tp_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/mpi_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/state_space_main_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/gpy_kernels_state_space_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/mapping_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/grid_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/variational_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/likelihood_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/minibatch_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/ep_likelihood_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/cython_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/meanfunc_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/misc_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/linalg_test.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/examples_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/plotting_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/inference_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/svgp_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/link_function_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/serialization_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing copying GPy/testing/pep_tests.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/testing creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/classification.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/subarray_and_sorting.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/mocap.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/decorators.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/normalizer.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/squashers.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/debug.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/quad_integrate.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/linalg.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/input_warping_functions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/ln_diff_erfs.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/multioutput.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/diag.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/functions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/linalg_gpu.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/datasets.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/parallel.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/cluster_with_offset.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/netpbmfile.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/misc.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/initialization.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/config.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/choleskies.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/gpu_init.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/block_matrices.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/pca.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/univariate_Gaussian.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/warping_functions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting copying GPy/plotting/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting copying GPy/plotting/abstract_plotting_library.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting copying GPy/plotting/Tango.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/plot_util.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/kernel_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/data_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/gp_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/inference_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot copying GPy/plotting/gpy_plot/latent_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/gpy_plot creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/maps.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/base_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/visualize.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/img_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/priors_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/svig_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/ssgplvm.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/mapping_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/util.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/defaults.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/plot_definitions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep copying GPy/plotting/matplot_dep/variational_plots.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep/controllers copying GPy/plotting/matplot_dep/controllers/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep/controllers copying GPy/plotting/matplot_dep/controllers/imshow_controller.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep/controllers copying GPy/plotting/matplot_dep/controllers/axis_event_controller.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/matplot_dep/controllers creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/plotly_dep copying GPy/plotting/plotly_dep/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/plotly_dep copying GPy/plotting/plotly_dep/defaults.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/plotly_dep copying GPy/plotting/plotly_dep/plot_definitions.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/plotting/plotly_dep running egg_info writing requirements to GPy.egg-info/requires.txt writing GPy.egg-info/PKG-INFO writing top-level names to GPy.egg-info/top_level.txt writing dependency_links to GPy.egg-info/dependency_links.txt reading manifest file 'GPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' writing manifest file 'GPy.egg-info/SOURCES.txt' copying GPy/defaults.cfg -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy copying GPy/installation.cfg -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy copying GPy/kern/src/coregionalize_cython.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/coregionalize_cython.pyx -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/stationary_cython.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/stationary_cython.pyx -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/stationary_utils.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/stationary_utils.h -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src copying GPy/kern/src/sympy_helpers.h -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/todo copying GPy/kern/src/todo/odekern1.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/todo copying GPy/models/state_space_cython.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/models copying GPy/models/state_space_cython.pyx -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/models copying GPy/util/choleskies_cython.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/choleskies_cython.pyx -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/data_resources.json -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/football_teams.json -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/linalg_cython.c -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util copying GPy/util/linalg_cython.pyx -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/util running build_ext building 'GPy.kern.src.stationary_cython' extension creating build/temp.freebsd-13.0-CURRENT-amd64-2.7 creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I. -I/usr/local/include/python2.7 -c GPy/kern/src/stationary_cython.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/stationary_cython.o -fopenmp -O3 In file included from GPy/kern/src/stationary_cython.c:242: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I. -I/usr/local/include/python2.7 -c GPy/kern/src/stationary_utils.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/stationary_utils.o -fopenmp -O3 cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/stationary_cython.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/stationary_utils.o -L/usr/local/lib -lpython2.7 -o build/lib.freebsd-13.0-CURRENT-amd64-2.7/GPy/kern/src/stationary_cython.so -lgomp ld: error: unable to find library -lgomp cc: error: linker command failed with exit code 1 (use -v to see invocation) error: command 'cc' failed with exit status 1 *** Error code 1 Stop. make: stopped in /usr/ports/science/py-GPy
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