Date: Sun, 21 Sep 2008 12:34:02 GMT From: Wen Heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/127520: [NEW PORT]science/py-hcluster:A Hierarchical Clustering Package For Scipy Message-ID: <200809211234.m8LCY2WQ059737@www.freebsd.org> Resent-Message-ID: <200809211240.m8LCe2Ej072807@freefall.freebsd.org>
next in thread | raw e-mail | index | archive | help
>Number: 127520 >Category: ports >Synopsis: [NEW PORT]science/py-hcluster:A Hierarchical Clustering Package For Scipy >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Sep 21 12:40:02 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 7.0 release >Organization: ChangAn Middle School >Environment: FreeBSD tinderbox.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root@logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386 >Description: py-hcluster library provides Python functions for agglomerative clustering. Its features include * generating hierarchical clusters from distance matrices * computing distance matrices from observation vectors * computing statistics on clusters * cutting linkages to generate flat clusters * and visualizing clusters with dendrograms. The interface is very similar to MATLAB's Statistics Toolbox API to make code easier to port from MATLAB to Python/Numpy. The core implementation of this library is in C for efficiency. WWW: http://code.google.com/p/scipy-cluster/ >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # py-hcluster # py-hcluster/files # py-hcluster/files/patch-setup.py # py-hcluster/pkg-plist # py-hcluster/pkg-descr # py-hcluster/distinfo # py-hcluster/Makefile # echo c - py-hcluster mkdir -p py-hcluster > /dev/null 2>&1 echo c - py-hcluster/files mkdir -p py-hcluster/files > /dev/null 2>&1 echo x - py-hcluster/files/patch-setup.py sed 's/^X//' >py-hcluster/files/patch-setup.py << 'END-of-py-hcluster/files/patch-setup.py' X--- setup.py.orig 2008-09-21 22:20:16.000000000 +0800 X+++ setup.py 2008-09-21 22:20:34.000000000 +0800 X@@ -33,7 +33,8 @@ X print string.join(l, '\n') X # Prompt the user with a list of selections. X while not (s >= 1 and s <= len(valid_paths)): X- s = input('Selection [default=1]:' % s) X+# s = input('Selection [default=1]:' % s) X+ s=1 X if s == '': X s = 1 X else: END-of-py-hcluster/files/patch-setup.py echo x - py-hcluster/pkg-plist sed 's/^X//' >py-hcluster/pkg-plist << 'END-of-py-hcluster/pkg-plist' X%%PYTHON_SITELIBDIR%%/_cluster_wrap.so X%%PYTHON_SITELIBDIR%%/hcluster/__init__.py X%%PYTHON_SITELIBDIR%%/hcluster/__init__.pyc X%%PYTHON_SITELIBDIR%%/hcluster/__init__.pyo X%%PYTHON_SITELIBDIR%%/hcluster/cluster.py X%%PYTHON_SITELIBDIR%%/hcluster/cluster.pyc X%%PYTHON_SITELIBDIR%%/hcluster/cluster.pyo X@dirrm %%PYTHON_SITELIBDIR%%/hcluster END-of-py-hcluster/pkg-plist echo x - py-hcluster/pkg-descr sed 's/^X//' >py-hcluster/pkg-descr << 'END-of-py-hcluster/pkg-descr' Xpy-hcluster library provides Python functions for Xagglomerative clustering. Its features include X* generating hierarchical clusters from distance matrices X* computing distance matrices from observation vectors X* computing statistics on clusters X* cutting linkages to generate flat clusters X* and visualizing clusters with dendrograms. X XThe interface is very similar to MATLAB's Statistics XToolbox API to make code easier to port from MATLAB to XPython/Numpy. The core implementation of this library Xis in C for efficiency. X XWWW: http://code.google.com/p/scipy-cluster/ END-of-py-hcluster/pkg-descr echo x - py-hcluster/distinfo sed 's/^X//' >py-hcluster/distinfo << 'END-of-py-hcluster/distinfo' XMD5 (hcluster-0.1.9.tar.gz) = 1d24fd81648c8b154bca37b2fa91a274 XSHA256 (hcluster-0.1.9.tar.gz) = eb24c9ae0f2c65a2c2845d84350a4660af32fa36714a4ecca11c9085ae9d9bfa XSIZE (hcluster-0.1.9.tar.gz) = 42642 END-of-py-hcluster/distinfo echo x - py-hcluster/Makefile sed 's/^X//' >py-hcluster/Makefile << 'END-of-py-hcluster/Makefile' X# New ports collection makefile for: py-hcluster X# Date created: 2008-09-04 X# Whom: Wen Heping <wenheping@gmail.com> X# X# $FreeBSD$ X# X XPORTNAME= hcluster XPORTVERSION= 0.1.9 XCATEGORIES= science python XMASTER_SITES= CHEESESHOP XPKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} X XMAINTAINER= wenheping@gmail.com XCOMMENT= A Hierarchical Clustering Package For Scipy X XBUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy XRUN_DEPENDS= ${BUILD_DEPENDS} X XUSE_PYTHON= yes XUSE_PYDISTUTILS= yes X X.include <bsd.port.mk> END-of-py-hcluster/Makefile exit >Release-Note: >Audit-Trail: >Unformatted:
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?200809211234.m8LCY2WQ059737>