From owner-svn-ports-all@freebsd.org Fri May 29 02:03:30 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 4597932C73E; Fri, 29 May 2020 02:03:30 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 49Y7C614ndz4gHd; Fri, 29 May 2020 02:03:30 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 2051E102B5; Fri, 29 May 2020 02:03:30 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 04T23Uqg047382; Fri, 29 May 2020 02:03:30 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 04T23ToU047378; Fri, 29 May 2020 02:03:29 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <202005290203.04T23ToU047378@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Fri, 29 May 2020 02:03:29 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r536875 - head/biology/py-biopython X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/py-biopython X-SVN-Commit-Revision: 536875 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 29 May 2020 02:03:30 -0000 Author: jwb Date: Fri May 29 02:03:29 2020 New Revision: 536875 URL: https://svnweb.freebsd.org/changeset/ports/536875 Log: biology/py-biopython: Upgrade to 1.77 Upstream support for python 3 PR: ports/246763 Submitted by: Mauricio Herrera Cuadra Modified: head/biology/py-biopython/Makefile head/biology/py-biopython/distinfo Modified: head/biology/py-biopython/Makefile ============================================================================== --- head/biology/py-biopython/Makefile Fri May 29 02:00:00 2020 (r536874) +++ head/biology/py-biopython/Makefile Fri May 29 02:03:29 2020 (r536875) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= biopython -PORTVERSION= 1.73 -PORTREVISION= 1 +DISTVERSION= 1.77 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -20,13 +19,16 @@ RUN_DEPENDS= ${PYNUMPY} USES= python USE_PYTHON= distutils autoplist -OPTIONS_DEFINE= REPORTLAB +OPTIONS_DEFINE= REPORTLAB OPTIONS_DEFAULT= REPORTLAB -REPORTLAB_DESC= PDF support in Bio.Graphics module +REPORTLAB_DESC= PDF support in Bio.Graphics module REPORTLAB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR} -pre-configure: # unbreak for python3: README.rst can't be decoded with the ascii codec: https://github.com/biopython/biopython/issues/1649 - @truncate -s 0 ${WRKSRC}/README.rst +post-install: + @${STRIP_CMD} \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*.so \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*.so \ + ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*/*.so \ .include Modified: head/biology/py-biopython/distinfo ============================================================================== --- head/biology/py-biopython/distinfo Fri May 29 02:00:00 2020 (r536874) +++ head/biology/py-biopython/distinfo Fri May 29 02:03:29 2020 (r536875) @@ -1,3 +1,3 @@ -TIMESTAMP = 1545454134 -SHA256 (biopython-1.73.tar.gz) = 70c5cc27dc61c23d18bb33b6d38d70edc4b926033aea3b7434737c731c94a5e0 -SIZE (biopython-1.73.tar.gz) = 15715102 +TIMESTAMP = 1590688894 +SHA256 (biopython-1.77.tar.gz) = fb1936e9ca9e7af8de1050e84375f23328e04b801063edf0ad73733494d8ec42 +SIZE (biopython-1.77.tar.gz) = 16837021